Thermococcus sibiricus: TSIB_1041
Help
Entry
TSIB_1041 CDS
T00928
Name
(GenBank) ATP-dependent RNA helicase, DEAD-family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsi
Thermococcus sibiricus
Pathway
tsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TSIB_1041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsi03019
]
TSIB_1041
03009 Ribosome biogenesis [BR:
tsi03009
]
TSIB_1041
Enzymes [BR:
tsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TSIB_1041
Messenger RNA biogenesis [BR:
tsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TSIB_1041
Ribosome biogenesis [BR:
tsi03009
]
Prokaryotic type
rRNA helicases
TSIB_1041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UvrD-helicase
Utp25_C
Cas3-like_C_2
ERCC3_RAD25_C
UvrA_inter
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACS90097
UniProt:
C6A3A2
LinkDB
All DBs
Position
complement(946655..947803)
Genome browser
AA seq
382 aa
AA seq
DB search
MSFEKLGLSENSLNAVRRKGFEKPTDIQKEVIPRLLRGDNDIIGQSQTGTGKTAAFALPL
IELIDEEIKEVQAIVITPTRELAIQVADEIRSLRGKRRINVLPVYGGQPIGPQIRNLRRG
VHIVVGTPGRVIDHIERGTLSLDGVSYFILDEADRMLDMGFIEDIERILRHTSEEKRVLM
FSATIPREILRLARRYLKDYEVIRIQDRSLAPELVEQIYFEVRPNKRFSLLCSILDEKDF
YGIVFCQTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIRVLVATDVAA
RGIDVKDLTHVINYSIPQNPEAYVHRIGRTGREGKRGKAITFVAPWESPKLRDIERVARV
KIKEMAYPTEYGRRKRDIPMVS
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaaaattaggactttcagaaaacagtttaaatgctgtaagaagaaaaggg
tttgaaaaaccaactgatattcaaaaagaagttattcccaggcttttaagaggagataac
gatataatcggccaatctcaaactggaacaggcaaaactgcagcttttgcgcttccgtta
atagaacttatagatgaggaaataaaagaggttcaggcaatagtaataacacccactagg
gagcttgcaatccaggttgcggatgaaataaggtctttgagaggaaaaaggagaataaat
gttcttcccgtttatggaggtcaaccaatagggccccagatcagaaatttaagaagggga
gtgcatatagtagttggaactccgggaagagtaattgatcacatagagaggggcacactt
tcattggatggtgtgagctacttcatattggatgaagctgatagaatgctggatatgggt
tttatagaagacatcgaaagaattttgaggcacacaagcgaggaaaagagagttttgatg
ttttctgctacaattcctagagagatacttcggttggcgaggagatatttaaaggactat
gaagtgattagaatacaggataggagtcttgctccggagttggttgagcaaatttacttt
gaagtacgcccgaacaagaggttcagccttttatgcagtattttggatgaaaaagatttc
tatggaatagttttttgccagacgaaaagagaaacgagggagctagcatcgaaacttaag
actaaagggtacagtgtggaggctttgaatggtgacattccacaaaagggaagagaaagg
attttagagcgctttaggaagggcaaaattagagtcctagtggcaaccgacgttgcagct
aggggaatagacgtcaaggatctaacgcacgtgataaactattcaattccccaaaacccg
gaagcttacgttcacagaattggtagaactggaagagaaggcaagagagggaaggccata
acatttgtcgccccttgggaatctccgaaactaagagatatagaaagagtagctagagta
aaaataaaagaaatggcgtacccaacagagtatggaaggagaaaaagagacattccaatg
gtgtcttga
DBGET
integrated database retrieval system
