Thermococcus sibiricus: TSIB_1213
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Entry
TSIB_1213 CDS
T00928
Name
(GenBank) ERCC2/XPD/Rad3-related DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
tsi
Thermococcus sibiricus
Pathway
tsi03022
Basal transcription factors
tsi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TSIB_1213
09124 Replication and repair
03420 Nucleotide excision repair
TSIB_1213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsi03021
]
TSIB_1213
03036 Chromosome and associated proteins [BR:
tsi03036
]
TSIB_1213
03400 DNA repair and recombination proteins [BR:
tsi03400
]
TSIB_1213
Enzymes [BR:
tsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
TSIB_1213
Transcription machinery [BR:
tsi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TSIB_1213
Chromosome and associated proteins [BR:
tsi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
TSIB_1213
DNA repair and recombination proteins [BR:
tsi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TSIB_1213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
Helicase_C_2
DEAD_2
DEAD
ResIII
AAA_30
AAA_19
AAA_35
Motif
Other DBs
NCBI-ProteinID:
ACS90267
UniProt:
C6A3S2
LinkDB
All DBs
Position
complement(1103756..1105687)
Genome browser
AA seq
643 aa
AA seq
DB search
MSEYFPYQSLRPNQEDFIKLVDTVVRNGENLVIEAPTGFGKTISVLAGALPYAKEMGYKI
IYLARTHKQMDRVIEELKAISNKTQVSGVEFRSRKELCLHQYVQNFAPDAYNAMIVCKNL
KKLGKCEFFENLKKKKEEFDELAQYFVQKPAEPMMILTHSKMLDFCPYELTRKIAFNSDV
IVASYLYMIDPAIRENFMAYFDFDYSDLIVIFDEAHNLPNQAINALSDRLSVYSINRAIK
EADEYKEHEIANFLSIFLKGLENLYQEKLRDLKIDEVPIIPESIFYHVFDVLKINEKQLI
RILDQMVKAGDAIREDKIERSLPPRSYVGRVGEFLLLWFALIGKEDYLFLMSREKGFSLE
LVALDPSKALSFVKNVQSAIFMSGTMTPLEAFADIMGIEGKLKKFPRIVKKENAIVLVAK
DVSTRGDERSLELYKKMAKYIVEAVKLIPKNVGVFTASYEVLEGLLSANVDIQIQEVSGK
KVFIEKRGASSKENDLLVMAFKEEAKRDGAVLLGVMGGRNSEGQDYSGDEMNGVILVGIP
YARPTPKVQAQIRYFENKFPRKGRYYGYVLPAHKKLVQAAGRVHRSEEEKGAVVVLDYRL
LWSNVRKDLPDWMKETIKPVTLASMKRHLIDFYRGEKIKVEKD
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatatttcccatatcaatccttgaggcccaatcaagaggatttcattaagttg
gtggatactgtcgttagaaatggagaaaacctggttattgaggcccccactggctttgga
aagacaataagtgtgctggcaggagcattgccgtatgccaaagagatggggtacaagatt
atctatctcgcaaggacacacaagcaaatggaccgggtaattgaggaacttaaagccata
agtaacaaaactcaggtaagtggtgttgagtttagaagtaggaaagagctctgtctccac
caatacgtccagaactttgctccggatgcatataatgcaatgattgtttgtaaaaacctt
aaaaaacttggaaaatgtgagttttttgaaaacctgaagaaaaagaaggaagaatttgat
gaacttgctcagtatttcgtacaaaaacctgctgaacctatgatgatattaacccattca
aaaatgcttgacttctgtccgtatgagcttactagaaaaatagcctttaattccgacgta
atcgtagctagttacctttacatgattgatccagctattagagaaaactttatggcatat
tttgactttgactattctgatctcattgtaatatttgatgaggcccataatttgcctaat
caggccataaatgctttaagtgatagattaagtgtttatagtattaacagggctataaaa
gaagccgatgagtataaagaacatgaaattgccaacttccttagtatattcttaaaaggg
ctggaaaatctgtatcaagaaaaattgagagatcttaaaattgatgaagtcccaataatt
ccagagagtatattttaccatgtttttgatgttttaaaaataaatgaaaaacaattgatt
aggattttggatcaaatggtgaaggcgggtgatgcaataagagaagacaaaattgagaga
agccttcctccgaggagctatgttggtagggttggagagttcttattgttgtggtttgca
ctcattggtaaggaggattatctgttcttgatgagtcgagaaaaaggattttccctggaa
cttgtagctcttgatccttcaaaggccttgagttttgttaagaacgttcaatcagcgatt
ttcatgtctggaaccatgacgccattggaggcttttgctgatattatgggcatagagggg
aagctgaagaagttcccaagaattgtaaaaaaagagaatgccattgttcttgttgctaaa
gatgtttctacacggggtgatgaaagaagtttggagctctataaaaaaatggctaaatat
attgtggaagctgtaaagctcatcccaaagaatgttggggtttttacggcgtcttatgag
gttcttgagggtcttttgtctgcaaatgtggatattcagattcaggaggttagtggaaag
aaagtattcatagagaagagaggcgcttcttccaaagaaaacgatcttcttgtgatggca
tttaaggaagaggctaagagggatggggctgttcttcttggagtcatgggcgggagaaac
agtgagggccaggattacagtggcgatgagatgaatggtgtaattttagttggtattcca
tatgcaaggccaactccaaaagttcaggcccagataaggtactttgaaaacaaattcccc
agaaagggaaggtattatggatatgttttaccagctcacaagaaactcgttcaggccgca
ggtagagttcatagaagtgaggaagagaagggtgcagttgtagtgttggattaccgttta
ttgtggagcaacgttagaaaagatttaccagattggatgaaagagacaataaaacctgtg
actttggcttcaatgaagcggcatcttatagatttttatagaggagaaaaaattaaagtg
gaaaaagattaa
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