Thermococcus sibiricus: TSIB_1242
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Entry
TSIB_1242 CDS
T00928
Name
(GenBank) DEAD/DEAH box RNA helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
tsi
Thermococcus sibiricus
Brite
KEGG Orthology (KO) [BR:
tsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsi03019
]
TSIB_1242
Messenger RNA biogenesis [BR:
tsi03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
TSIB_1242
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
Cas6_N
DEXQc_Suv3
LRV_FeS
Motif
Other DBs
NCBI-ProteinID:
ACS90296
UniProt:
C6A3V1
LinkDB
All DBs
Position
1131450..1133954
Genome browser
AA seq
834 aa
AA seq
DB search
MLFVIRKGKKEDELEAFYIENEPEKLSQVQNLKAERIFRLIMRDKRLFKVLEGSKYQNPK
EIEKMLRTAKIVLTSDAAGWEEYFKIRLQNKKVGKAELCRLCFLNGKITVLTEGNRIRYH
HEFICESCAEEELKNELRYRFRSLGMFDQAKKLLERFRDLNKVMAIFDPRFDPTKNPDVT
KWDELEPKHIKVKELSIDEINIPEEFKRVLKEEGVSKLLPVQSLAIKNGLLEGENLLVVS
ATASGKTLIGELGGVPKAFNGKKLLFLVPLVALANQKYEDFKKRYSKLGLKVAIRVGMSR
IKTKDELVVVDTGIDADIIVGTYEGIDYLLRAGRKIGNVGTIVIDEIHMLDDEERGARLD
GLIARLRKLYPNAQFIGLSATIGNPQELAKELGLKIVLYDERPVALERHVIIARNESEKW
RYVAQLCKAETMRKSPQGFKGQNIVFTYSRKRCHELAAFLTSKGLKAKPYHSGLPYHQRK
LTEMEFQAQMLDVVVTTAALGAGVDFPASQVIFESLAMGNKWLSVREFHQMLGRAGRPLY
HDKGKVYLIVEPGRNYSSQMEGSEDEIAFKLLTAPIEPVYVEWSDEMEQDQVLAHSCVFS
YLDDIEEVQNMCLGANQSAEKVLEKLEEFEFVKLRGKLVNVTPYGRAVSMSFLLPKEAQF
IRENLFKKHPREIAIKLQPFENVYLSGVIQRELENAVRGRLSSNIFSPSFASILEELEKV
LPEVSPNVQDKLFLIYQDFFMCEEEECTEYAMERVSSLVIELRRQGKHPTQIAEYFRRQY
SLVVYPGDVFTWLDGTIRKLEAIERITKVFRAKKAEFEARTLRRELEEGRKLRD
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgtaattagaaagggaaaaaaagaagacgagcttgaagcattttacattgaa
aatgaacccgaaaaactttcccaggttcaaaatttaaaagcggagagaattttcaggttg
ataatgcgagataaacggcttttcaaggtcttggaagggagcaaataccaaaatccaaaa
gagattgaaaagatgctgagaactgcaaaaattgttttaacttctgatgcagcgggatgg
gaggaatattttaaaatcaggctccaaaacaaaaaagtagggaaagcagagctttgcaga
ctttgttttttaaatggaaaaataaccgtgctaactgaaggaaacaggataagatatcac
cacgaatttatctgtgagagctgtgcagaggaagaactaaagaatgaactccgctacaga
tttagaagtctcggaatgtttgatcaagcgaaaaaactcctcgaacgatttagggatttg
aataaagtaatggctatttttgatccccgttttgatccaacaaagaatccagatgttacg
aaatgggatgaactagagccaaagcatatcaaggttaaagagctatccatagatgagata
aacattcccgaggagttcaagcgagttttaaaagaagaaggcgtttcaaagctccttcca
gtccaaagtttggccataaaaaacggtcttcttgagggagagaacttactggtagtttcc
gccacggcaagtggaaagactctcatcggggaactcgggggagttcccaaggctttcaat
gggaaaaaactcctctttctcgttccccttgttgctctggcaaatcagaagtatgaagat
tttaagaagaggtactctaaattgggacttaaagttgccataagagtgggaatgagcagg
ataaagacaaaagatgaacttgttgttgtagataccggaatagatgccgacataattgtt
ggaacttatgaaggcattgactatctcctcagggcaggaagaaaaatagggaacgttggg
acgatagtcatagatgaaatacacatgcttgatgacgaagagaggggagccaggctcgat
ggtcttattgcaaggctcagaaagctctatccaaatgcccagtttattgggcttagtgcc
accattggaaaccctcaagagctcgcaaaagaacttggattaaagattgttctatatgat
gaaaggcccgttgcacttgaaaggcacgtcattattgctagaaatgagagtgagaagtgg
cgctatgtagctcagctgtgcaaggctgaaacaatgaggaaatccccccaagggtttaag
ggacagaacatagtttttacttactcaagaaagagatgtcacgaacttgcggcgttttta
acgagtaaaggcttgaaggcaaagccctatcacagcggcttgccctaccaccaaagaaag
cttaccgaaatggaattccaagcccaaatgctcgatgtggttgtaactacagccgcatta
ggagccggagtggactttccagcatcccaggtaatattcgaaagcctcgcaatgggtaac
aaatggcttagcgttagggagttccaccagatgctcggaagggccggaagacctttatac
catgataagggtaaagtttacctcatagtcgagcccggaaggaactattcctcacagatg
gaagggagtgaagacgaaatagcgtttaaactactcaccgcaccaatagaacccgtttac
gtagagtggagcgatgaaatggagcaagatcaggttttagctcactcatgtgtcttttca
tatttggacgatatagaagaagtccaaaacatgtgtttgggtgcaaaccaaagtgccgaa
aaagttcttgaaaagcttgaggagtttgaatttgtaaagttgaggggtaagcttgtaaac
gttacaccctacggaagagccgttagtatgagctttttactgccaaaagaagctcagttc
ataagagaaaacctcttcaagaagcatccaagggagattgcgattaagctgcagccattt
gagaacgtttatctttccggagttattcagagagagcttgaaaatgccgttagaggaagg
ctgagcagcaacatcttttccccaagctttgcttcgattttagaggagcttgaaaaagtt
ctgccagaggttagtccaaatgtgcaggataaactgtttttaatttaccaagacttcttc
atgtgcgaggaagaggagtgcaccgaatatgccatggagagagtttcatcgcttgtaatc
gagctcagaaggcagggaaaacatccgactcaaatagcggaatacttcagaaggcagtac
tcccttgtggtctacccgggagacgtctttacatggctcgacggcacaataaggaagctc
gaagccattgagagaattacaaaggtgtttagagccaagaaagctgaattcgaggcaaga
accttgagaagagagctcgaagagggaagaaagttaagagattaa
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