Thermococcus sibiricus: TSIB_1269
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Entry
TSIB_1269 CDS
T00928
Name
(GenBank) SsDNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tsi
Thermococcus sibiricus
Pathway
tsi03410
Base excision repair
tsi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TSIB_1269
03430 Mismatch repair
TSIB_1269
03440 Homologous recombination
TSIB_1269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsi03400
]
TSIB_1269
DNA repair and recombination proteins [BR:
tsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TSIB_1269
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TSIB_1269
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TSIB_1269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
ACS90323
UniProt:
C6A3X8
LinkDB
All DBs
Position
complement(1151317..1152747)
Genome browser
AA seq
476 aa
AA seq
DB search
MMDKNAFLEKVREGAELIKMHIELGHSIRIISHRDADGITAGAILAKAIAREGADFHLSI
VKQLSEDLIKELAEEDQKIYIFSDLGSGSIRFIERYLADATVVIADHHPPEDGEIEQENH
VIVNPTQFGADSVRDLSGSGVAYFITKALNEKNKDLSYLALVGAVGDMQEVDGQFHGINV
EIIDDAKKLELIELRKEIRLFGRETRTLAQMLAYASNPELPGITGDLRNAIEFLRSKGFD
PDVNYWQLKEEEKRKLHDALVIHLIKNNASKEDIDRLIGDVILIRKYPEGDPRHEAREFA
TLLNATGRLNMGALGVAICLGDEKAFRDALKLVEEYKKEQIEMRKYLIQNWNSAIEKDHA
YVFYAGKNIKDTMVGIAATIAINAQLTNPEKPVVVLADSEEDGLIKGSARTTKRGIEKGY
NLGEALRRAAEVLGGEGGGHAIAAGIRIPKDKLDEFTELIDKLLGQQNSSGDNNGN
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgatggataaaaatgcattcttagaaaaggttagggaaggagcagaactaataaaaatg
cacattgagttaggtcatagtatacgtataatctcccatagagacgctgatggtatcact
gcgggagctatcctagccaaagctatagcaagagaaggtgcagattttcatttaagcatc
gttaaacagcttagtgaggatcttataaaagaacttgccgaagaagatcaaaagatatat
attttcagtgatctcggaagtggttccataaggtttattgagagatatctagctgatgct
actgtagtaatagctgatcatcatccccccgaagatggagagattgaacaagaaaatcat
gttattgtgaaccctacccagtttggagcagatagtgttagagatcttagtggttcaggg
gtggcttacttcatcacaaaggcactaaatgagaaaaacaaagacttgagttacttagct
ttggttggagcagttggggatatgcaagaagttgatggtcagtttcacgggataaacgtt
gaaataatagatgatgcaaagaaacttgaattaatagaattgcgtaaagaaatacgtctt
tttggaagagaaactcgaactttggctcaaatgcttgcatatgcatcgaatccagagtta
cctgggataacaggagatttgaggaatgccatagaatttctacggagtaaggggtttgat
cctgacgtgaattactggcagctcaaagaagaggagaaaaggaaattgcatgatgcacta
gtaattcatctgattaaaaacaatgcatccaaagaagatatagataggctcataggagac
gtgattttgattagaaaatatcccgaaggtgatccaagacatgaggcaagggagtttgct
actttactaaatgcgactgggaggctcaacatgggagctttaggagttgcaatatgtcta
ggagatgaaaaagcatttagagatgcactaaaacttgtggaggagtacaagaaggaacaa
atagaaatgaggaaatacctcatccaaaattggaacagtgcgattgagaaagatcatgct
tacgtgttttatgcaggtaagaacatcaaagatacgatggtggggatagctgctacaata
gcaataaatgcccaattaacaaatccagaaaaaccagtagtagttttagcagatagtgag
gaagatgggcttattaaagggtcagctagaacaacaaaaagaggaattgaaaagggctat
aaccttggagaggccctaagaagggctgcagaagtactgggaggcgaaggtggaggtcat
gctatagctgcagggataagaattccaaaagataagctagatgagttcactgaacttata
gataagctccttgggcagcaaaactcaagtggtgacaacaatggaaattaa
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