Tenacibaculum singaporense: D6T69_03080
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Entry
D6T69_03080 CDS
T09846
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tsig
Tenacibaculum singaporense
Pathway
tsig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D6T69_03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsig03019
]
D6T69_03080
Enzymes [BR:
tsig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D6T69_03080
Messenger RNA biogenesis [BR:
tsig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D6T69_03080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AZJ36986
UniProt:
A0A3S8RAZ3
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All DBs
Position
complement(679313..680632)
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AA seq
439 aa
AA seq
DB search
MTFTSLGLSKALVKAVTEKGYETPSPIQEKAIPVILEGKDVLASAQTGTGKTAGFILPIL
QNISEKKNPKYRPIKALVLTPTRELAAQVYDNVREYSTHLNIKSTAIFGGVKPSSQIATL
KNGIDVLVATPGRLIDLHEQNQLSLKRVDVLVLDEADRMLDMGFLRDIKKIISFLPQKRQ
NLLFSATFSKEIKKLAQGILHNPVLVEAAPENTTAEKVNQKLYKVPKSKKTELVGQLISK
GNWSQVLIFTRTKHGANRLTEKLIKRGISAAAIHGNKSQGARTKALKGFKDNSIRVLVAT
DIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVAQEEETYLKSIEK
LLGQKITISELEGFDLSTIKNEVTTERPKQQSRNKPAKKSFKTSSDPKKKTKKTSTENSK
KHTPRKRNNRKRRNSNKPS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgacatttacatcgttaggtttatcaaaagctttagtaaaagcggtaaccgaaaaaggg
tacgaaacaccctctcctattcaagaaaaagcaattccagttattttagaaggcaaagac
gtattagcttctgcacaaaccggaacaggaaaaactgcaggatttatcttgcctatttta
caaaatatatcagaaaaaaagaatccaaaatatcgtccgatcaaagcattggtactaaca
cctacaagggaattagctgctcaagtatatgataatgtgcgcgaatacagtacacattta
aatattaaatctaccgctatttttggtggcgtaaaaccaagctctcaaatagcaacactt
aaaaacggaattgatgttttggtagctactcctggtagattaatagatttacacgagcaa
aatcaactttctttaaaacgtgttgacgttttagttttagatgaagccgacagaatgctt
gacatgggttttttacgagatataaaaaaaataatctcttttttacctcaaaaacgtcaa
aacttattgttttcggcaactttttcaaaagaaataaaaaaattagcacaaggtatttta
cacaaccctgtattggttgaagctgccccagaaaatacaacggccgaaaaagtaaaccag
aaactatataaggttcctaaaagtaaaaaaaccgaactagttggtcagttgatttcaaaa
ggtaactggagtcaggtattaatttttactcgaaccaaacacggtgctaacaggttgact
gaaaaactaattaaacgaggaatttctgccgcagctatacacggaaacaaaagtcaagga
gcaagaaccaaagctttaaaaggttttaaagacaattctattcgagtattggtagctact
gatattgctgcacgtggattagatattccattgcttccacacgttattaattttgaactt
cctaacgttcctgaagattatgtgcatcgaattggtagaacaggaagagcaggcgctagt
ggagaagctatttcattagtagcccaagaagaagaaacttacttaaaaagtattgagaag
ttattagggcaaaaaattactatttctgaattagaaggttttgatttatctactataaaa
aatgaagtaactactgaacgaccaaagcagcaatctagaaataaaccagctaaaaaatcg
tttaagacatcttctgatccaaagaaaaaaacaaaaaaaacctcaacagaaaattcaaaa
aaacatactcctagaaaacgaaataaccgtaaaagaaggaatagcaacaaaccatcttaa
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