Tenacibaculum singaporense: D6T69_04055
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Entry
D6T69_04055 CDS
T09846
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tsig
Tenacibaculum singaporense
Pathway
tsig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D6T69_04055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsig03019
]
D6T69_04055
Enzymes [BR:
tsig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D6T69_04055
Messenger RNA biogenesis [BR:
tsig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D6T69_04055
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZJ34740
UniProt:
A0A3Q8RM16
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All DBs
Position
complement(877386..878618)
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AA seq
410 aa
AA seq
DB search
MQFTDLQLNKSILKALTEERHHKPTLVQQEVIPLVLDKKDVIVAAQTGTGKTAAFALPII
QELSKEADVEKGAKKIKALIISPTRELAIQIEENFKTYSKYTNLRSTVIYGGMSTQPQKD
VLVKGVDILIATPGRFIDLHKQGSIDVRQLKTFVLDEADLMLDMGFIDDVRKIEELCPRK
KQTLLFSATMPEKVNDLAKSMLYKPEKVDISPTETTSKNIGQLLYYTPKKHKVDLCLHLL
RNTIKGRIIIFRRTKFGVDKLEKTLQKNGYKATSVHGDKSQNLRNQAIEDFKNNKANILI
ATDVAARGIDVSKVDAVINVDLPNIPETYVHRIGRTGRAGKSGIAFSLCSADETSYIKAI
QEFMDRTIKIVEDHPFPLAKPKKKKQPNTISKHKKGRKSEASKKKKKRWY
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttacagacttacaactcaataaatctatcttaaaagcgcttacggaagaaagg
catcacaaaccaactttagtacaacaagaagtaattccattggtactcgataaaaaagat
gtgattgtagctgcacaaacaggtactggtaaaactgctgcttttgcattacctattatt
caagagctttctaaagaagctgatgttgaaaaaggagccaaaaagatcaaagctttaatt
ataagccctacccgagaacttgccattcaaattgaagaaaattttaaaacctatagtaag
tacactaacttaagaagtactgttatatatgggggtatgtctacacaacctcaaaaagat
gtactggtaaaaggtgttgatattttaattgctactccaggtcgttttatcgacttgcac
aaacaaggtagtattgatgttcgtcaactaaaaacttttgttttagatgaagctgattta
atgttagacatgggctttattgacgatgtaagaaagattgaagaattgtgtccgcgtaaa
aaacaaaccttactattttctgcaacgatgccagagaaggtgaacgatttagcaaaatca
atgttgtacaaacctgagaaagtagacatttcacctacggaaactacttctaaaaacatt
ggtcaactactgtattacacaccaaaaaaacataaggttgacttgtgtttgcacttatta
cgcaatactataaaaggacgtattattatatttcgtcgtaccaaatttggagttgacaaa
ttggagaaaactcttcaaaaaaacggctataaagcaaccagtgttcatggtgataaatct
caaaacttacgtaaccaagccatagaagacttcaaaaacaacaaagccaacattttaatt
gctaccgatgttgctgctcgtggaattgacgttagtaaagtagatgcggtaattaatgtt
gacttacctaacattcctgaaacgtatgtgcatagaattggaagaactggtagagcaggt
aaatctggaatcgccttttcgttatgtagtgcagatgaaacttcctatatcaaagctatt
caagaatttatggatagaactataaaaattgtagaagaccatccatttccgttagccaaa
ccgaagaagaaaaaacaacccaacactattagtaaacacaaaaaaggaagaaaatcagaa
gcttctaaaaaaaagaaaaaacgctggtattaa
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