Thermocoleostomius sinensis: OXH18_06605
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Entry
OXH18_06605 CDS
T09238
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsin
Thermocoleostomius sinensis
Pathway
tsin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OXH18_06605 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsin03400
]
OXH18_06605 (mfd)
Enzymes [BR:
tsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OXH18_06605 (mfd)
DNA repair and recombination proteins [BR:
tsin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OXH18_06605 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WAL61649
UniProt:
A0A9E8ZGZ6
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All DBs
Position
complement(1525076..1528642)
Genome browser
AA seq
1188 aa
AA seq
DB search
MAFSSITRALGRLPLTTELLSKLDQQHCLQLNGISRLPKGLVASALAQAQKRPLLVVTAT
LEEAGRWAAQLEAMGWATLHFYPTSEASPYEPFDSESEMTWGQLQVLADLTKEKGETIAD
KPDADATNLRPSTFAIVTTARALQPHLPPVEAFRPYCLTLQRGMELDLEDLSQQLAHLGY
DRVPLVEMEGQWSRRGDIIDVFPVASELPVRLELFGDELDQIREFDPSTQRSLDNVDRLL
LTATDFRPLILQGLRATGTLESLGSLLTPEELEQLQAGTPLEGMRRFLGLAFDRPVSLLD
YLPSDTLVAIDEPEQCRAHSDRWFEYAEEQWQELGNREPGVGSREEQTPNSQPSIPPIHR
SFTESLTALEQFDRLYLSELAEEGNGLNLSSRPVPAIPHQFARLAETLRQERDRGFSIWL
VSAQPSRSVALLQEHDCPAQFVPNPRDYPAIDKLQAQRTPVAVKYSGLAELEGFILPTFR
VVVVTDREFFGQHTLATPTYVRKRRQAASKQVDPNKLELGDYVVHRNHGVGRFLKLESLT
INNETREYLVLQYADGLLRVAADQLNALSRYRGTGSEAPELNKMSGKAWEKAKSKVRKAI
KKVAFDLLQLYAQRAQQQGFAYPIDTPWQQEMEDSFPYQPTPDQLKAIQDVKRDMESPRP
MDRLVCGDVGFGKTEVAIRAIFKAITAGKQVALLAPTTILTQQHYHTLKERFAPYPIQVG
LLNRFRTAEERKEIQQRLATGELDVVVGTHQLLGKGVQFKDLGLLVVDEEQRFGVNQKEK
IKTLKTQVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRPIKTHLAPYDGEVVRTA
IRQELDRGGQIFYVVPRVEGIEETAGRIREMVPSARIAIAHGQMQEGELEATMLTFSNGD
ADILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFFPKQNQ
LTEQARQRLRAIQEFTQLGSGYQLAVRDMEIRGVGNLLGAEQSGQMNAIGFDLYMEMLEE
AIKEIRGQEIPQVDDTQIDLNLTAFIPADYIPDLDQKMSAYRAVASAHSQRELTQIAADW
NDRYGAIPPAAQQLLRIMELKQIAKSLGFSRIKPDGKQHVVLETPMEEPAWNLLKDNLPD
HLKTRFVYTPGKVTVRGLGVLKADQQLENLIDYLKRMTGAIPQPVAIG
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggccttctcctccatcactcgtgccttgggacgcttgcccctcacgaccgaactgttg
tccaaacttgaccaacagcattgcttgcagctaaacggcatctctcgtttgcccaaggga
ctggtggcatctgccttagcccaagcccaaaagcggcctttgctggttgtcacggccaca
ctcgaggaagccggacgctgggcggcccaattagaagcgatgggttgggcaacgttgcat
ttttatcccacttcggaggcgtccccctacgaaccgtttgactcggaatcggaaatgact
tggggacaactacaagtcctggctgatttaaccaaggagaaaggcgaaacaatagcagat
aaacctgacgctgatgctacaaacctccgaccctcgacctttgccattgtcaccacggcc
cgagcgctgcaaccgcatttaccacccgtggaggcgtttcgtccctactgcttaaccttg
cagcggggcatggaactggatctggaagatttgagtcagcaattggcgcacttgggctat
gatcgcgtgccgttggtggaaatggagggacagtggagtcgtcgcggagacatcattgat
gtgtttccggtggcgtctgagttgccagtgcgcttggaactatttggtgatgaactcgat
caaatccgcgagtttgatccgtccacccaacgatcgctcgataacgtcgatcggctgcta
ctaacggccaccgattttcgtcccctgattctgcaagggctaagggcaacgggaacactc
gaatctctagggtctctactcactcccgaagagctagagcaattgcaggcaggcacgccg
ttggagggaatgcggcgatttttaggtttagcgtttgatcgtcctgtctctctgttggac
tacctgccgagcgacacactcgttgccattgacgaacccgaacaatgccgcgctcacagc
gatcggtggtttgaatatgctgaagaacaatggcaggaattgggaaatcgggagccggga
gtcgggagtcgagaagagcaaactcctaactcccaaccctcaatcccccctatccatcga
tcgtttaccgaatcgttaactgctctcgaacagttcgatcgcctttatttatcggaattg
gcggaggagggcaatgggttaaatctgtcgagtcgtccagttccggcgattccacatcag
tttgctaggttggcagaaacgctgcggcaagagcgcgatcgaggcttttcaatttggttg
gtgtcggcgcaaccgtctcgatcggtggcgttgctgcaagaacacgactgtccggctcag
tttgtaccaaatcctcgcgattatccggcgattgataagttgcaagctcagcggacgccc
gtggcggtgaaatattcaggactagcggaactagaaggcttcattctgccgacgtttcgc
gtggtggttgtcaccgatcgcgagttttttggtcagcataccttggcgacacccacttat
gttcgcaagcgacggcaagccgcctcgaagcaagttgaccccaataagctagaactgggc
gattatgtggtgcatcgcaatcacggggtggggcgatttttgaagctggaaagtctaacg
attaacaatgaaacccgcgaatatttggtgctgcaatatgcagatggcttgctgcgggtg
gcggccgatcagttgaatgcgctatcgcgctatcgcggtacgggtagtgaggcgcccgaa
ctaaataaaatgtcggggaaagcatgggaaaaagccaagagcaaagttcgcaaagccatc
aaaaaagtagcgtttgatctgctccaactttatgcccaacgggcgcaacagcaaggcttt
gcttacccgatcgatactccgtggcagcaagaaatggaggattcgtttccctatcagccg
accccagatcaactgaaggcaattcaggacgtgaagcgcgatatggaaagcccgcgtcca
atggatcgactagtgtgcggcgatgtagggtttggcaaaaccgaagtggcaatccgcgcc
attttcaaggcaattacggctggcaagcaggtggcgctgctggctcctaccaccattctg
acacagcagcactatcacaccctcaaagaacggtttgccccctatcccattcaagtaggc
ttactgaatcgcttccgcacggctgaagaacgcaaagagattcaacaacggctggcgact
ggggaattagatgtggtggtgggcacgcatcaattgttgggtaaaggtgtgcaatttaaa
gatctgggtttgctggtagtagatgaagaacagcggtttggtgttaaccagaaagaaaag
attaaaacactgaaaactcaggtagacgtgctgacccttagcgctacgccgattccgcgc
acgctgtatatgtcgctgtcgggggtacgagagatgagtttgattaccacaccaccgccg
tctcgtcgcccaattaaaacccatctggctccctatgatggggaagtggtgcgcaccgcc
attcggcaggaactcgatcgcggtgggcaaatcttctatgttgtgccgcgtgtggaaggc
attgaagaaacagcgggtcgtattcgtgaaatggttcccagtgctcgcattgccatcgcc
catggtcagatgcaagaaggcgaactggaagcgaccatgctcaccttcagcaatggcgac
gccgatattttggtttgcactaccatcatcgaatcggggttagacattccccgcgtcaac
acaatcctgattgaagacgcccaaaagtttggtttgtcgcagttgtatcaattgcgcggg
cgggttgggcgggctggcattcaggctcacgcatggctatttttcccgaagcaaaaccaa
ctcaccgagcaagctcgacagcggttacgagcaattcaagagtttacgcaactggggtca
ggctatcaactagccgtgcgcgacatggaaattcgtggtgtcggcaatttgctaggagcg
gaacaatccgggcagatgaacgcgatcggctttgatttatacatggaaatgttggaagaa
gcgatcaaagaaattcgcggacaggaaattccccaagttgatgatacccagatcgatctc
aacttgacggcctttattcccgcggattacattcccgatctcgaccaaaaaatgagtgcc
taccgcgccgtcgcttccgcccattcccagcgagaactgacccaaattgctgctgattgg
aacgatcgctatggagccattccacccgccgcgcaacaactattgcgaattatggaactg
aagcaaattgccaagtcccttgggtttagtcgaatcaaaccagacggcaagcagcatgtg
gttctagaaacacccatggaggaacccgcctggaacctgctgaaagataacctgccagac
cacctgaaaacccgctttgtttatacccctggtaaagttaccgtgcgcggcttgggcgtg
ctgaaagctgatcaacaactggaaaacctaatcgattacctcaaacggatgaccggcgct
attccacaacctgtggcgatcggctag
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integrated database retrieval system
