Thermocoleostomius sinensis: OXH18_15140
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Entry
OXH18_15140 CDS
T09238
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsin
Thermocoleostomius sinensis
Pathway
tsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OXH18_15140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsin03019
]
OXH18_15140
03009 Ribosome biogenesis [BR:
tsin03009
]
OXH18_15140
Enzymes [BR:
tsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OXH18_15140
Messenger RNA biogenesis [BR:
tsin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OXH18_15140
Ribosome biogenesis [BR:
tsin03009
]
Prokaryotic type
rRNA helicases
OXH18_15140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
HEM4
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WAL58515
UniProt:
A0A9E8ZC31
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All DBs
Position
3494271..3495677
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AA seq
468 aa
AA seq
DB search
MTLSFHSLGLSEARVRHLEKVGFTVPTAIQTQAIPHLLSGRDVVGQAQTGTGKTAAFSLP
ILERINLNNGAVQALILTPTRELAIQVYQSIRAFNHDKRLHVLPIYGGQSIDIQIRRLQR
GSQIVVGTPGRVLDLLNRGDLRLDQLNWIVLDEADEMLNMGFIQDVEKILSQAPAERQTA
FFSATMDPSIRELAAKFLRSPVTVTVEQPKAAPARINQVAYIVPRGWTKARALQPILEME
DPESALIFVRTRKAAAELTRQLQAAGHSVDEYHGDLSQSQRERLLLRFRQRQVRWVVATD
IAARGLHVEDLTHVINYDLPDSAESYVHRIGRTGRAGKEGTAISIIHPLDKRKLRDIERH
IRQRLEIGTIPTRAEIEARHLQKLQDRLRETLSSERIASFLPIVAQLSEEIEPHMIAAAA
LQMAYDQTRPTWMRLEPNYEEVPVDEPRSSRSYPSKSKPIKRKAPVSS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgactctttcatttcatagccttggtctatctgaagccagagttcgccacctagaaaaa
gttgggtttactgttccaaccgcgattcagacacaggcgattccacatttgttgtccgga
cgagatgtcgttggacaagctcaaacgggaactggcaaaacagccgctttctcgctgcca
attttagagcgcatcaacttaaataatggtgcggttcaagctttaattctgactccgact
cgtgaattagctattcaggtttatcaatccattcgggcttttaatcacgataaacggctg
catgtactgccaatttatggggggcagtcgatcgatattcaaattcggcggttgcagcgt
ggctctcaaattgtagtgggcacaccaggacgagttctagatttactcaatcgcggtgat
ttacgcctcgatcagttgaactggattgtgttggatgaagccgacgaaatgctaaacatg
ggctttattcaagacgtagaaaaaattcttagccaagccccagcagaacggcaaactgcg
ttcttctcggccaccatggacccctctattcgggaactggccgctaagtttttgcgatcg
cccgtcacggttacagttgagcaacccaaagcggcgccagcccggatcaaccaagttgcc
tatattgtgccgcgtgggtggacgaaggctcgcgcacttcaacccattttggaaatggaa
gatccggaatcggcattgatctttgtgcgcactcgcaaggcagcggcagaactaacgcgt
caacttcaggcggcgggacacagcgttgacgaatatcatggcgatctcagtcagtcgcaa
cgagagcggttgttgttaagattccggcaacgacaagtgcgctgggtggttgccaccgat
attgcggctcgtggcttgcatgtggaagatttgacccatgtgattaactacgatctgcct
gatagcgctgaaagctatgtgcaccgcattggacggactggacgagccggcaaagaagga
accgcaatctcgatcattcatccattagacaagcgtaaattgcgcgatattgagcgacac
attcgccaacgtttggaaattggtacaattccaacccgggctgaaattgaggcgcgccat
ctacagaaattgcaagatcgtttgcgggaaacgctttctagtgagcgcattgcctccttt
ttgccgattgtagcccaactcagcgaagagatcgagcctcacatgattgcggcagcggct
ctgcaaatggcctatgaccaaacacgtcctacttggatgcggttggaaccaaattacgaa
gaagtgcccgtcgatgaacctcgttcgtcccgttcttatccctctaaatccaagccaatt
aagcgcaaagctcctgtttcttcctag
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