Thermocoleostomius sinensis: OXH18_18520
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Entry
OXH18_18520 CDS
T09238
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tsin
Thermocoleostomius sinensis
Pathway
tsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OXH18_18520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsin03019
]
OXH18_18520
03400 DNA repair and recombination proteins [BR:
tsin03400
]
OXH18_18520
Enzymes [BR:
tsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OXH18_18520
Messenger RNA biogenesis [BR:
tsin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OXH18_18520
DNA repair and recombination proteins [BR:
tsin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OXH18_18520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
PcrA_UvrD_tudor
Cas3-like_C_2
AAA_30
DUF3553
T3SS_needle_reg
HVO_A0261_N
Motif
Other DBs
NCBI-ProteinID:
WAL59152
UniProt:
A0A9E8ZAB6
LinkDB
All DBs
Position
complement(4278025..4279686)
Genome browser
AA seq
553 aa
AA seq
DB search
MSKSRLKTNLEQIAKTRFGYTEWRPGQKEAIQSVLKGHDTLAIMPTGSGKSAIYQIAAFV
IPGATVVISPLIALQRDQVNAILNQDIGDAAVINSAIDSSEREDAFEQLEDGDLEFIFLA
PEQFNQAETLERLQAAKPSLFVIDEAHCISAWGHDFRPDYLRLGQIIDALDHPRILALTA
TAAPPVRSEIIERLNMRNANVIVQGFDRPNIELVVERFDDEGEKQTYLVNQILKVKKPGI
VYVATRKRAEELTKQLQEHGIKSEYYHAGMKASDRQETEIAFMDDQIEVLVATTAFGMGV
DKPNIRFVFHADISDSIDSYYQEIGRAGRDHELSRAILFYNPEDLNLRRFFSSSGQVNLA
DINQVVEALQLQIDPIAPKDLQSQLDLSKTKLKSALNYLTDAGAVENTPTGEVKLRPKAD
LDAVAEAVLETQEQRRQVERSRLDMMRNYAEIRSCRRQYLLNYFGEKFAGPCTTCDNCKA
SITQDDAKTQETETTQHQQPYPVDSRVKHKSWGEGTVMRYEGETIVVLFEQVGYKTLDVR
TAILRQLLQRVKP
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatcacgcctcaagacgaatctagaacaaattgctaagacacgatttggttac
acagaatggcgtcccggtcaaaaggaagcaattcaatcagttctaaaagggcatgatacg
cttgcaattatgccaacgggatctggcaaatcagcaatctaccaaattgcggcgtttgtt
attcctggcgctacggttgtaatctcgcctctgattgcgctacaacgagatcaggtgaat
gccatcctgaatcaggacataggagatgcggcagttatcaattcggctattgattcgagt
gaacgagaagacgcatttgaacaactggaagatggcgatctagaatttattttcttagca
ccagagcagttcaaccaagctgaaacgcttgagcgattgcaagcggctaaaccttcactg
tttgtgatagacgaagctcactgtattagtgcttgggggcatgactttcgtccggattac
ttgcgtctggggcaaattattgatgcattagaccacccgcgtattctagccttaactgct
acagcggctcctccggtacgttctgagattatagagcgattaaatatgcgcaatgccaat
gtgattgtgcaaggattcgatcgccccaacattgagttagtagtagaacgatttgatgat
gaaggcgagaaacaaacttacctagttaatcaaattcttaaagtcaaaaaaccaggaatt
gtatatgtagcgactcgtaaacgcgctgaagaactgacgaagcaactacaagaacacggc
attaaatctgagtattatcatgctggcatgaaagcatccgatcgccaggaaactgaaata
gcgttcatggatgatcaaattgaagtactagtagcaacaacggcatttggcatgggtgta
gataaacctaatattcgttttgtatttcatgctgacattagtgattcgatcgactcctat
tatcaggaaattggtcgggcaggacgagaccatgaactgtcccgcgctattctgttttat
aatcccgaagatttgaacttgcgccggtttttctcaagcagtggacaggtcaatctagca
gatattaaccaagttgtggaagcgctgcaattacagatagacccaatcgcgcctaaagat
ttacaatcccaactagatctgtcgaaaacaaaattgaaaagtgcgttgaactatctgacg
gacgcaggtgcggtagaaaacacgccaactggcgaagtaaaattgcgacctaaggcagat
ttagacgcagtggccgaagctgtgttagaaacccaagagcaaagacggcaggtcgaacga
tcgcgtctagacatgatgcgcaactatgccgaaattcgcagttgccgtcgtcaatatttg
ctcaactattttggtgaaaagttcgctggcccttgtacaacttgcgataattgcaaggct
agtatcacgcaagatgatgctaagacgcaagaaaccgaaaccacccaacaccagcaaccc
tatccagtagatagtcgagtcaaacacaaatcatggggtgagggtactgtgatgcggtat
gaaggcgaaacgatcgtggttttatttgagcaggtgggatataaaacgctagacgtgaga
actgctattctgcggcaactgttacaacgggtaaagccataa
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