Thermocoleostomius sinensis: OXH18_19380
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Entry
OXH18_19380 CDS
T09238
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tsin
Thermocoleostomius sinensis
Pathway
tsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OXH18_19380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsin03019
]
OXH18_19380
Messenger RNA biogenesis [BR:
tsin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OXH18_19380
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Arabino_trans_N
Motif
Other DBs
NCBI-ProteinID:
WAL59315
UniProt:
A0A9E9CAS9
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Position
complement(4493540..4495294)
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AA seq
584 aa
AA seq
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MSQNASSNSLKIIPLGGLHEIGKNTCVFEYNDEIVLLDAGLAFPTDGMHGIQVVLPDTSY
LRENRHKIKGMIVTHGHEDHIGGIPFHLKQFDIPVIYGPRLAMSLLQDKLEEAGVGDRTE
LRTVGPRDMVRVGSSFLVEYIRNTHSMADSFSVAIHTPVGVVIHTGDFKVDHTPVDGERF
DLQRLAEHGEKGVLCLISDSTNAEVPGFTPSERSVFPNLDRAIAQAPGRVFVTTFASSVH
RVNMILELAKKHKRVVSVLGRSMLNVIAHARNLGYIKCDDDLFVPLNMVNKLPDEQVLIL
STGSQGEPMAAMSRIARQEHRQVKIREGDTVIFSANPIPGNTIAVVNTIDKLMMQGAKVI
YGRDKGIHVSGHGSQEDQKLMLALTKPKFFLPVHGEHRMLVKHAETAQSMGVPAENMVVI
NNGDVVELTRDSIRVVDKVPSGIELVDAAHSGVVNERVLKERQHLAEEGVVTIAATLGWS
GELISKPQVHLRGVATNIDRAKLEATIAQTIELVVSSRWAELTQALDNLSELNWPRLQSD
IEMELRRLLRRELQNNPSLVFLLQTPIEPPVASGRRRSTAKVAS
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaacgcttcctcaaattcattgaagattattcctctcggtgggcttcatgaa
attggaaaaaatacctgcgtctttgaatacaacgacgaaattgtgctgcttgatgcggga
ctggccttcccaaccgatggaatgcacggtatccaagttgttttacccgacacgagctac
ctgcgtgaaaatcgccacaaaatcaagggtatgattgtcacccacggtcatgaagaccat
attggcgggattccctttcatcttaagcagtttgatattccagtgatctatggcccgcgt
ctagccatgtcgctgttgcaagacaagttggaagaggccggtgtgggcgatcgaactgaa
ctgagaaccgttggccctcgcgatatggtgcgggttgggtcgtcgtttttagtggaatat
attcgcaatacccattcaatggctgatagcttttcagtggcgattcatacgcctgtgggg
gtagtgatccatacgggagactttaaggtcgatcacacccctgtggatggtgagcgcttt
gatttgcagcgattagccgaacacggcgagaaaggagtgttgtgcttaattagtgactca
accaatgcagaagtgcctggttttacaccatcagaacgatcggtctttccaaatctcgat
cgcgcgattgcccaagcaccagggcgagtttttgttacgacctttgcctcatcggtgcat
cgagtcaatatgattttggaattagccaagaagcacaagcgtgtggtttcggtgttggga
cgatcgatgttgaatgtgattgcccatgctcgcaatctgggctacatcaaatgcgatgat
gatctattcgtgccgctcaacatggttaataagttgcccgatgagcaagtgttaattctc
tcaacaggttctcagggggaaccgatggctgccatgtcacgcattgcccgccaagaacac
cggcaagtcaaaatccgtgagggcgatacggtgatcttttcagccaaccccattccaggt
aacaccatcgccgtagtgaatacgatcgacaagctcatgatgcagggcgccaaggtgatc
tatggccgcgataagggcattcacgtatccggacatggctcccaggaagatcaaaagctg
atgctggccctgaccaaacccaaattctttctccctgttcatggcgagcatcgcatgtta
gtgaaacatgccgagacagcccagagtatgggggttccggctgaaaatatggtggtgatt
aataacggggatgtggttgagctaacccgtgattcaattcgggttgttgataaagtccct
tctggaattgaattagtagatgcggctcattcgggagttgtaaatgaacgggtattgaaa
gaacggcaacatttggcagaggagggagttgtcactatagcagcgactttgggctggagc
ggtgaattaatatcgaagccccaggtacatctgcggggtgttgcaaccaatattgatcgg
gcaaaattagaggcgacgatcgcccaaacgattgaactggtagtcagtagtcgttgggca
gaactcacccaagcgcttgataacctgagtgagttgaattggccgaggctgcaatcggat
attgaaatggaactgcggcgactgctgcggcgggaattgcaaaacaatccatccctagtg
ttcttgttgcaaacccccatagaaccgcctgttgctagtggtcggcgacgatcgactgcc
aaagttgcctcctaa
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