Candidatus Thiothrix sulfatifontis: L3K52_03460
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Entry
L3K52_03460 CDS
T09924
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsj03016
]
L3K52_03460
Enzymes [BR:
tsj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L3K52_03460
Transfer RNA biogenesis [BR:
tsj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L3K52_03460
Prokaryotic type
tRNA splicing ligases
L3K52_03460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UOG92796
LinkDB
All DBs
Position
complement(675102..676304)
Genome browser
AA seq
400 aa
AA seq
DB search
MPISFMLNKGKVPVKIFTDDVDSGSLTQLGNLSQLPFIHSHIAAMPDVHHGIGATVGSVI
PTRGAIIPAAVGVDIGCGMNAVRLSLKAHDLPDNLYSIRSAIEQRVPTGFDEHERPSING
STLNNMGKHLDVITDKHPGLVKMLKNFHRQWGKQLGTLGGGNHFIELCIDESDDVWVMLH
SGSRGVGNAIGRYFIEKAKKDVGRELGQLPDKDLAYFTEGTKHFDDYVEAVGWAQDYALV
NRREMMRLVLDALQRSKALPTFTTTREAINCHHNYVQKETHFGAEVYLTRKGAISAQLGQ
LGIIPGSMGAKSYIVRGLGNEQSFCSCSHGAGRRMSRTEAKRRFNTLDLEAQTKGIECRK
DKGVVDEIPGAYKDIDAVMQNQTDLVEVVHTLKQVICVKG
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcagttttatgctcaataagggcaaagtgccggtcaagatttttactgacgat
gtggatagcggctcgctgacacagttgggaaacctgtcgcaactgcccttcatccacagc
cacattgcggcgatgccagacgtgcatcacggcattggtgcgaccgtgggttcggtgatt
cccacccgtggcgcgattattcccgctgctgtcggcgtggatattggttgtggaatgaac
gcggtacgtttatcgctcaaagcccacgacttgcccgacaacttgtacagcattcgcagc
gcgattgaacagcgcgtacccacgggtttcgacgaacacgaacgccccagcatcaacggt
tcgacgctcaataatatgggtaagcatctggatgttattaccgacaagcaccccggactg
gtgaaaatgttgaaaaactttcaccgtcaatggggcaagcaactcggcacactcggtggt
ggcaatcattttatcgagctgtgcatcgacgaaagtgacgacgtgtgggtgatgctgcat
tccggcagtcgcggggtcggcaatgccatcgggcgttatttcatcgaaaaggccaaaaag
gatgtggggcgagaactcggtcaattgcccgacaaagacctcgcctacttcaccgaaggc
acaaagcatttcgatgattacgtggaagcggtcggttgggcgcaggattacgccctggtc
aatcgtcgcgaaatgatgcgcttggtattggatgcgttgcaacgcagcaaagccttgccc
accttcaccaccacccgcgaagcgatcaactgccaccacaattacgtgcaaaaggaaacg
cacttcggcgcggaagtctacctgacccgcaaaggcgcaatcagtgcgcagttggggcag
ctcggcattattcccggcagcatgggcgcgaaatcgtacatcgtgcgcggcttgggcaac
gaacaatcgttctgctcctgttcacacggcgcggggcgacgcatgagccgcaccgaagcc
aaacggcgtttcaacaccctcgatctggaagcccagaccaagggcatcgaatgccgcaag
gacaaaggcgtggtcgatgaaattcccggcgcgtacaaagacatcgacgcggtaatgcag
aaccaaaccgatctggtcgaggtcgtacatacgttgaaacaagtcatttgcgtgaaaggt
tag
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