Candidatus Thiothrix sulfatifontis: L3K52_03950
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Entry
L3K52_03950 CDS
T09924
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsj03016
]
L3K52_03950
Enzymes [BR:
tsj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L3K52_03950
Transfer RNA biogenesis [BR:
tsj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L3K52_03950
Prokaryotic type
tRNA splicing ligases
L3K52_03950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UOG92889
LinkDB
All DBs
Position
complement(778941..780173)
Genome browser
AA seq
410 aa
AA seq
DB search
MSTTATPYEVLHEAGHAPVKAWTKGVPFDDNSKKQLLNIAQMPFIHQWVAAMPDVHLGKG
ATIGSVIPTVGAIIPAAVGVDLGCGMMAAKTTLTAADLPDSLEAMRSKIEKVVPHGRVAT
RGKRDTGSWGDPPDDVLEKWLALSAGFQRLCEKHPFLKNTNNLKHLGTLGTGNHFIEVCL
DETQTVWVMLHSGSRGVGNAIGTHFIEQAKKDMERYFINLPDKDLAYIPEGSPHFRDYVA
AVAWAQDFAQANREVMMARTLQAIREVLPIPFTADVEAVNCHHNYINREHHYGKDVWVTR
KGAVSAQKGQLGIIPGSMGAKSFIVRGLGNAESFCSCSHGAGRVMSRTEAKRRVSLEEHK
RAVAGVECRVDESVIDETPSAYKPIDKVMAAQSDLVEVLHTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgagcactaccgccactccctacgaagtcctccacgaagccggtcacgcgcccgttaaa
gcgtggacaaaaggcgtgcctttcgacgacaactccaaaaagcaattgctgaacattgcg
cagatgccgtttattcaccagtgggtagcggcgatgccggatgtgcatttggggaaaggt
gcaaccattggcagcgtgatcccgaccgtgggggcgattattccggcggcggtgggcgtg
gatttgggttgcgggatgatggcggcgaaaaccaccttgaccgcagccgatttgcccgat
tcgttggaagcgatgcgtagcaagattgagaaggttgttccgcatgggcgcgtggcgact
cgcggtaaacgcgataccggaagttggggtgatccgccggacgatgtactggaaaaatgg
ctggcgttgagtgcgggtttccagcggttgtgcgagaagcacccgttcctgaaaaacacc
aataacttgaagcatttggggacgctgggtacgggcaaccatttcatcgaggtgtgtctg
gatgaaacccaaaccgtgtgggtgatgttgcacagcggttcacgcggggtgggcaatgcc
atcggtacgcactttatcgagcaggcgaaaaaggatatggaacgctatttcatcaacttg
ccggataaggatttggcgtacatccccgaaggtagcccgcatttccgcgactacgtggcg
gcggtggcgtgggcgcaggatttcgcgcaagccaaccgcgaggtgatgatggcgcgtact
ttgcaggcgatccgcgaggtattgccgatcccgttcacggcggacgtggaggcggtgaat
tgccaccacaactacatcaaccgcgaacaccattacggcaaggatgtgtgggtgacgcgc
aaaggggcggtgagtgcgcaaaaaggtcagcttgggattattccgggcagcatgggggcg
aaatcgttcatcgtgcgcgggctgggtaatgccgaaagtttttgcagttgcagccacggc
gcggggcgcgtgatgtcacgtactgaggcgaaacgccgcgtgtcgctggaggagcataaa
cgcgctgttgcgggggtggaatgccgcgtggatgaaagcgtgatcgacgaaacgccgtcg
gcttacaaaccgattgataaggtgatggcggcgcagagcgatttggtggaagtgctgcat
acgttgaagcaggtggtgtgtgtgaaggggtga
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