Candidatus Thiothrix sulfatifontis: L3K52_04310
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Entry
L3K52_04310 CDS
T09924
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L3K52_04310 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsj03400
]
L3K52_04310 (ung)
Enzymes [BR:
tsj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
L3K52_04310 (ung)
DNA repair and recombination proteins [BR:
tsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
L3K52_04310 (ung)
Prokaryotic type
L3K52_04310 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
UOG92960
LinkDB
All DBs
Position
852981..853664
Genome browser
AA seq
227 aa
AA seq
DB search
MQTIILPPSWQTALGAELTKPYMLDLSNFLQAETAAGKHILPAAEQRFNALQSTPLDQVN
VVILGQDPYPTPGHAHGLAFSVQAHVAALPRSLLNINRELHDDLGVDNSHTGCLQAWAAQ
GVLLLNTALTVEAGNAGSHQKRGWETFTDTVIQAVSAQMQPVMFILWGNHAQKKTALIDT
ARHGILASAHPSPLSARRGFFGSQPFSRTNAFLQAKGRAPINWLLPA
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactatcattcttcccccaagctggcaaactgctctcggtgcagaactcaccaag
ccctacatgctcgacctgagcaatttcctgcaagcggaaactgctgcgggcaaacacatc
ctgcctgcggcggagcagcgtttcaacgccctgcaaagcacgcccctagatcaggtcaac
gtggttattctcggtcaagacccataccccacaccgggtcatgcgcacggtctggcgttt
tcggtacaagcgcatgttgccgcgttaccgcgttcgctgctcaatatcaaccgcgaattg
catgacgatttaggcgtagacaatagccacacaggttgcctgcaagcatgggcggcgcaa
ggcgttttgctgctcaacaccgcactaacggtagaagcgggcaacgcgggcagccatcaa
aaacgcggttgggaaacttttaccgacacggtaatccaagccgttagcgctcaaatgcaa
cccgtgatgttcatcttgtggggcaatcacgcgcagaaaaaaaccgcgctgatcgacacc
gctcggcatggcatccttgccagtgcgcacccgtcacccttgtcggcacggcgcggtttt
tttggcagtcagccgttttcacgcaccaatgcgtttttgcaagccaagggcagagcgccg
attaattggttattgcctgcctag
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