Candidatus Thiothrix sulfatifontis: L3K52_04330
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Entry
L3K52_04330 CDS
T09924
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsj03032
]
L3K52_04330
03400 DNA repair and recombination proteins [BR:
tsj03400
]
L3K52_04330
Enzymes [BR:
tsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
L3K52_04330
DNA replication proteins [BR:
tsj03032
]
Prokaryotic type
DNA Topoisomerases
L3K52_04330
DNA repair and recombination proteins [BR:
tsj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
L3K52_04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UOG92964
LinkDB
All DBs
Position
complement(856714..859197)
Genome browser
AA seq
827 aa
AA seq
DB search
MSENLVIVESPAKGKTIQKYLGQGFEVLASYGHVRDLIPKEGAVDTDNGYAMRYEIIDRN
QKHVDAIARALKKADNLYLATDPDREGEAISWHLYELLNERGALKGKNVQRVVFHEITKR
AVQEAIANPRDLAYDLVDAQQARRALDYLVGFNLSPLLWRKIKPSLSAGRVQSPALRLIV
EREDEIERFVRQEYWTMTAQNAKNGQAFNARLHTLDNHKLDQFDINNEARATEVRERLLQ
AANGKLLVSKVDKKQRKRYPAPPFTTSTLQQEAVRKLKFSTQRAMRVAQQLYEGIDLGSG
PVGLITYMRTDSVTLANEAIGELRGLIEQRYGQDKLPETPNFYKTKSKNAQEAHEAVRPT
SAYRTPEQVKNHLNEEQFKLYELIWKRTVACQMIYATLDTVSADLTAAAGSFFRASGSTI
RDAGFLLVYEEGLDDRASEKENPLPPLEEGESVTLNDIAAEQHFTEPPPRYSEASLVKVL
EEYGIGRPSTYASIISTLLAREYVELESRRFTPTDIGRIVIRFLTEHFTQYVDYDFTANL
ENELDEISRGEKAWVPVMDAFWQPFHTLVDEKMESVNRSDVLQSREIGIDPASGRPVSVR
LGRFGPMVQIGTKDDEEKLVFAGLRPGMKLDTVTLEEALELFKLPRQLGDTEDGKAISTN
VGRFGAYVKYGDQFASLKKEDDPHTITLERALELIAEKKIKDAEKILVDFGNGVQILKGR
WGPYINKVIKRVKVQARLPKDREPDSMTLEECEALIAVVAEAKTAKKGAKKAAAAPATET
AEQPAADAPAKPAKAKAAPKKAAAAKKPAAKKPTASKKAPSPKKSAS
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaatctagtaatcgtcgaatccccggcgaagggtaaaaccatccaaaagtac
ttggggcaagggtttgaagtgctggcctcttacgggcatgtgcgcgatttaatccccaag
gaaggcgctgtcgacaccgacaacggctacgcaatgcgttatgaaatcatcgaccgcaac
caaaagcacgtcgatgcgattgcgcgggcgctcaaaaaagccgacaacctgtacctcgcg
actgacccggatcgcgaaggcgaagccatctcttggcatttatacgaattattgaacgaa
cgcggcgcactcaaaggcaaaaacgtgcagcgcgtggtcttccacgaaatcaccaaacgc
gccgtgcaagaagccattgccaacccgcgtgaccttgcctacgatctggtggatgcgcag
caagcccgccgcgccttggattatctggtcggtttcaacctctccccgttgctgtggcgc
aaaataaaacccagcctgtccgccgggcgggtgcaaagccccgccttgcgcctgattgtg
gaacgtgaagacgaaatcgaacgtttcgtccgccaagaatactggacgatgaccgcgcaa
aatgccaaaaacgggcaagccttcaacgcccgtttgcacacgctggataatcacaaactc
gaccaattcgacattaacaatgaagcgcgggcaaccgaagtgcgcgagcgtttgctgcaa
gctgctaacggcaaattgctggtcagcaaagtcgacaaaaaacagcgcaagcgttacccc
gcgccgcctttcaccacctcgaccttgcagcaggaagcggtacgcaaactcaagttttcc
acccaacgcgccatgcgggttgcccagcaattgtacgaaggcattgacttgggcagcggg
ccggtgggtttaattacctacatgcgtaccgactcggtaacgttggcaaacgaagccatc
ggcgaattgcgcggtctgatcgaacaacgttacggacaagataaattgccggaaacgccc
aatttctacaaaaccaaatccaaaaacgcgcaagaagcgcacgaagcagtacgcccgacc
tcggcataccgcaccccggaacaggtcaaaaaccacctcaatgaagaacagttcaagctg
tacgaattgatctggaaacgcacggttgcctgccaaatgatctacgccacgttggatacg
gtatcggcggatttgaccgccgccgcaggcagtttcttccgcgcctccggctcgaccatc
cgcgatgccggtttcttgctggtgtacgaagaaggcttggatgaccgcgccagcgaaaag
gaaaacccgctgccaccgttggaagaaggcgaaagcgtcaccctcaacgacattgccgcc
gaacaacatttcaccgagccgccaccgcgttattcggaagcgtccttggtaaaagtttta
gaagaatacggcattgggcgaccatcgacctacgccagcattatttccaccctgttggcg
cgtgaatacgtcgaactggaaagccgccgcttcacaccgaccgatattgggcgcattgtg
atccggtttttgacggagcatttcacccaatacgtcgattacgatttcactgcgaatctg
gaaaatgagctggatgaaatttcgcggggtgaaaaggcttgggttccggtgatggatgcg
ttctggcaaccgttccacacgctggttgacgaaaaaatggaaagcgtcaaccgcagcgac
gtgttgcaatcgcgcgaaatcggcattgaccccgccagtggcagacccgtatcggtgcgt
ttagggcgctttggccccatggtgcaaatcggcaccaaagacgatgaggaaaagctggtc
ttcgctgggttacgtcccggaatgaagctggatacggtcacactcgaagaagccctcgaa
cttttcaaactgccgcgtcaattaggcgataccgaagacggcaaagccatcagcaccaat
gtcgggcgctttggggcttacgtcaaatacggcgaccaattcgcctcgctgaaaaaggaa
gacgacccgcacaccattaccttggagcgggctttggaactgattgctgagaaaaaaatc
aaggatgcggaaaaaattctggtggatttcggcaatggggtgcaaattctcaaagggcgt
tgggggccgtacatcaacaaagtcatcaagcgcgtcaaagtgcaagcacgtctgcccaaa
gaccgcgaacccgacagcatgaccttggaagaatgcgaagcgttgattgcggtcgttgcc
gaagccaaaactgccaagaaaggcgcgaagaaagcagccgctgcgcccgcaacagaaacg
gcagaacagccagccgccgatgctccggcaaaaccggcgaaagccaaagcagcgccgaaa
aaagccgctgctgccaaaaagcccgccgcgaagaaaccgacggcaagcaaaaaagcacct
agcccgaaaaaatcagcgagctaa
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