Candidatus Thiothrix sulfatifontis: L3K52_04445
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Entry
L3K52_04445 CDS
T09924
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj03030
DNA replication
tsj03410
Base excision repair
tsj03420
Nucleotide excision repair
tsj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L3K52_04445 (polA)
03410 Base excision repair
L3K52_04445 (polA)
03420 Nucleotide excision repair
L3K52_04445 (polA)
03440 Homologous recombination
L3K52_04445 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsj03032
]
L3K52_04445 (polA)
03400 DNA repair and recombination proteins [BR:
tsj03400
]
L3K52_04445 (polA)
Enzymes [BR:
tsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L3K52_04445 (polA)
DNA replication proteins [BR:
tsj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L3K52_04445 (polA)
DNA repair and recombination proteins [BR:
tsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
L3K52_04445 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L3K52_04445 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UOG92985
LinkDB
All DBs
Position
879120..881825
Genome browser
AA seq
901 aa
AA seq
DB search
MPSNSRKPLVLVDGSSYLFRAFHALPPLTNAHGEPTGAMHGVLNMLDKLRKDYDPEHMAV
IFDAPGKTFRDDLYPQYKANRPPMPDDLRCQIEPLLTIIRAQGYPLLIIPDVEADDVIGT
LAVQYDGKVIISTGDKDMAQLVDERVHLINTMSGHYADPAGVVEKFGVAPERIRDYLALI
GDTVDNVPGVNKVGPKTAVKWLDEYGSLENIMARAAEFKGKIGENLREALAHLPLSFELV
TIKCDVELDLQPETLAFAPPDVETLRALYERYGFRTRLAGLDKEEKAEEGNQSISPAPAA
TYTTILTQPDLDAWLTRLQAAAEFAFDTETTSLDYMEAEIVGVSFAIAAGEAAYLPLAHD
YLGAPPQLNREAVLAQLKPLLEDPTIRKIGQNLKYDRSVLMNHGITLRGIAHDTMLQSYV
LDSTASRHDFDTLCAKHLNHTTISFADIAGKGKNQLTFNQVALEQATPYAAEDADYTLRL
HQHFWAQLQALDGQRKLYESVEVPLVSVLSTIERNGVKVDAAMLARHSQELETRMHSVML
EAYAAAGQEFNLASPKQLGEILYTKLGLTAPRKTPKGQPSTAEDVLEELADMGHELPKLI
LVHRGLAKLKSTYTDKLPQQINPRTGRVHTSYHQAVASTGRLSSSDPNLQNIPIRTEEGR
RIRQAFIAESGCQLLAADYSQIELRIMAHLSRDAGLLNAFAQGLDVHRATAAEVFGTPLA
DVTTEQRRAAKAINFGLIYGMSAFGLAKQLGVDRRDAQDYVNLYFARYPGVKQYMDDTRE
QARAQGYVETLFGRRLFLPDIHSKNAATRQYAERTAINAPMQGTAADIIKKAMLAVDAWL
QNSGLRTKMIMQVHDELVFEVPENEMATVREHVVALMTNAAALAVPLLVESGVGNNWDEA
H
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgccaagcaatagccgcaaaccgctcgtcctcgtggacggttcatcctacctgttccgc
gctttccacgcgctccccccgctgaccaatgcacacggcgaacccaccggcgcaatgcac
ggcgtattgaatatgctggataaattgcgcaaggattacgaccccgaacacatggcggtg
attttcgacgcacccggcaaaaccttccgcgatgacctttacccgcaatacaaagccaac
cgcccgccgatgccggacgatttgcgctgccagattgaacccttgctgacgattattcga
gcgcaaggctacccgctgctgattattcctgacgtggaagccgatgacgtaatcggcacg
ttagcggtgcaatacgatggcaaagtgattatttccaccggcgacaaagacatggcgcaa
ttggtagatgagcgcgttcacctgatcaataccatgagcgggcattacgccgaccccgct
ggcgtggtggaaaaattcggggttgcgccagaacgcatccgcgattacctcgcgctgatt
ggcgataccgtggataacgtccccggtgtcaacaaagttggccctaaaacagcggtcaaa
tggctggacgaatacggttcgctggaaaacattatggcacgagccgccgagttcaaaggc
aaaatcggcgaaaacctgcgtgaagccttggcgcatttaccgctgtctttcgagctggtc
acgattaagtgcgatgtggaactggatttgcagccggaaacgttggcgtttgctccgccg
gacgtggaaaccttgcgggcgctgtatgagcggtatgggtttcggacgcggttggcgggg
ttggataaggaggaaaaagcagaggaaggtaatcaatctatttctcccgctcccgccgca
acctacaccaccatcctcacccaacccgacctagacgcttggctaacccgcctgcaagcc
gccgccgaattcgccttcgacaccgaaaccaccagcctcgattacatggaagctgaaatc
gttggcgtgtcttttgcgattgcggcgggcgaagccgcttacctgccattggcgcacgat
tacctcggcgcaccgccacaactcaaccgcgaagcagtgttggcgcaactcaagccattg
ctggaagaccccactattcgcaaaatcgggcaaaacctcaaatacgaccgcagcgtcttg
atgaatcacgggattaccttgcgcggcattgcgcacgacaccatgctgcaatcgtatgtg
ctggattcgaccgccagccgtcacgatttcgacacgctgtgcgccaaacacctcaaccac
accaccatcagctttgccgacattgccggtaagggcaaaaaccaactgacgtttaaccaa
gttgcgttggaacaagccaccccgtatgcggcggaagatgccgattacaccctgcgcttg
catcagcatttctgggcgcaactgcaagccctcgacgggcagcgcaagctctacgaaagc
gtggaagtgccgctggtgagcgtgctgtcgacgattgagcgcaatggcgtgaaagtcgac
gcggcgatgttggcgcgtcacagccaagaactcgaaacgcggatgcattccgtgatgttg
gaggcttacgcggcggcggggcaggaatttaaccttgcctcacccaagcaattgggggaa
atcctttacaccaagctcggtttgaccgcgccgcgcaaaacgcccaagggtcagccgtct
accgccgaagacgtgttggaagaactcgcggatatggggcatgaattacctaagctgatt
ttggtgcatcgtgggttggcgaaactcaaatccacgtacaccgacaaattgccgcagcaa
attaacccgcgtaccgggcgcgtgcatacctcttaccatcaggcggtggcttcgaccggg
cggttgtcgtcgtcagacccaaatttgcagaatatcccgattcgcactgaagaagggcgg
cgcattcgccaagcgtttatcgcggaaagcggctgtcaattgctggcggcggattattcc
cagatcgaattacgcattatggcgcatttgtcgcgtgatgccggtttgctgaatgcgttt
gcgcaagggctggatgtgcatcgcgccacggctgcggaagtcttcggcacaccgttggcg
gacgtgaccacggaacaacgtcgagcggcgaaggcgattaacttcgggctgatttacggg
atgtcggcgtttggtttggcaaaacagttgggcgtggatcggcgtgatgcgcaagattac
gtcaatctgtatttcgcccgttaccccggtgtgaaacagtacatggatgacacccgcgaa
caggcacgcgcccaaggctatgtggaaacgctgttcgggcggcgtttattcctgccggat
attcattcaaaaaatgccgctacccgtcagtatgcagagcgcacggcgattaatgcgcca
atgcaaggcactgcggcagatattattaagaaagcgatgctggcggtggatgcatggctg
caaaacagcggcttacgcaccaaaatgattatgcaggtgcacgatgaactggtgtttgaa
gtgccggaaaacgaaatggcaacggtgcgcgaacacgtggttgcgctaatgacgaatgcc
gcagcgttagcagtgccattgttggtggagagtggggtggggaataattgggatgaggcg
cattga
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