Candidatus Thiothrix sulfatifontis: L3K52_04855
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Entry
L3K52_04855 CDS
T09924
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj03420
Nucleotide excision repair
tsj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L3K52_04855 (uvrD)
03430 Mismatch repair
L3K52_04855 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsj03400
]
L3K52_04855 (uvrD)
Enzymes [BR:
tsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3K52_04855 (uvrD)
DNA repair and recombination proteins [BR:
tsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L3K52_04855 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
L3K52_04855 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AtzG-like
Motif
Other DBs
NCBI-ProteinID:
UOG93065
LinkDB
All DBs
Position
complement(955809..958019)
Genome browser
AA seq
736 aa
AA seq
DB search
MNTDSPILAPLNPQQQLAVAAPPKSVLVLAGAGSGKTRVLVHRIAWLIEVENVSPLSILA
VTFTNKAAAEMRGRIQDLLQLPSGGMWVGTFHGISHRLLRLHWQQAKLPQTFQILDSEDQ
IRMVKRILKSLELDETRFPPRQVAGFINARKDEGSRPHHIEDKGDFNQRQMVQIYSVYEQ
TCQRNGVVDFAELLLRSLELLRDNPDLQQHYRNRFRHILVDEFQDTNALQYAWLRLLAGD
KNPVFAVGDDDQSIYGWRGAKIENIRNFTKHFPDCETVRLEQNYRSTANILKAANALIDN
NKGRLGKNLWTDGKDGERLHLYAAFNEIDEARFVAGRIQKWVDQGGMRRDVAILYRSNAQ
SRVFESTFNENRIPYRVYGGLRFFERAEIKDALAYLRLTVNHQDDASFERIVNHPPRGIG
ERTVDILRSHARATNLSLWEAAAQAADIGDFTPRASNGVLGFVQLIKRMASDIHSLPLRE
QVEIVIELAGLKPHFLAKEKGEAGQGRVDNLNELVTAAQGYTYVQSEETPDMSELSAFLS
HAALEAGEGQGEAGEDCVQMMTLHSAKGLEFPLVFLCGLEEGLFPHQMSADDPARLEEER
RLCYVGITRAEKELVMSYAEQRMLHGRTQFNPPSRFLRELPPELVEEVRPKVKTYSTGFG
GNNQFRAPANAPKLVTRTTNLNETGYRVGQRVHHAKFGDGVITDSEGAGAHSRVQVNFKA
VGVKWLVLGYANLEKI
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagactcccccatactcgcccccctaaacccgcagcaacaactcgccgttgct
gcgccgcccaaatccgtcctcgtcctcgcaggcgcaggcagcggtaaaacccgcgtgcta
gtgcatcgcattgcatggctgatcgaagtcgaaaacgtctcgccattaagcatcctcgcc
gtgaccttcaccaacaaagcggcagcagaaatgcgcggacgcatccaagacctgctgcaa
ctgcccagcggcggtatgtgggttggcaccttccacggcatttcgcaccgcttgttacgc
ctgcattggcaacaagccaaattgccgcaaaccttccaaattctcgattccgaagaccag
attcgcatggtcaagcgcatcctcaaatccttggaactcgacgaaacccgcttcccgccg
cgtcaagttgctggtttcatcaatgcgcgtaaggacgaaggttcgcgcccgcaccacatt
gaagacaaaggcgatttcaaccaacggcaaatggtgcaaatttacagcgtgtacgaacaa
acctgccaacgcaacggcgtggtcgatttcgccgaactgctgctgcgctcgctggaattg
ctgcgcgataaccccgacctgcaacagcattaccgcaaccgtttccgccacattttggtg
gacgaattccaagacaccaacgcgctgcaatacgcatggttgcgcctgttggcgggggat
aagaatccggtgtttgcggtgggcgatgacgaccagtcgatttacggctggcgcggcgcg
aagatcgaaaacatccgcaatttcaccaaacatttccccgattgcgaaacggtgcggctg
gaacaaaactaccgttccaccgccaatatcctcaaagccgccaatgccttgattgataat
aacaaagggcgtttgggcaaaaacttgtggacggatggcaaagacggcgaacgcctgcac
ctctacgccgccttcaacgaaatcgacgaagcgcgttttgttgccggacgcattcaaaaa
tgggtagatcagggcggaatgcgccgcgacgttgccattttgtaccgttccaacgcgcaa
tcgcgggtgtttgaaagcacgtttaacgaaaaccgcattccctaccgcgtctatggcggc
ttacgcttctttgaacgcgccgaaatcaaggacgcgctggcgtatttgcgcctcaccgtc
aaccaccaagacgatgcctcgtttgaacgcatcgtcaatcacccaccacgcggcattggc
gaacgtaccgttgacatcttgcgcagccacgcccgcgccaccaacctgtccttgtgggaa
gccgccgcgcaagccgctgacattggcgatttcaccccgcgagccagcaatggcgtgctc
ggtttcgtgcaactgatcaaacgcatggcaagcgacattcacagcttgcccttgcgcgaa
caagtcgaaatcgtcatcgagcttgccggactcaaaccgcatttcctcgccaaagaaaaa
ggcgaagcggggcaagggcgcgtcgacaacctcaacgaattagtcaccgccgcacagggt
tacacctacgtgcaatccgaagaaaccccggacatgagcgaactttccgccttcctctcg
cacgcggcgttggaagcgggcgaaggtcagggcgaagccggtgaagattgcgtgcaaatg
atgacgctgcactctgccaagggtttggaattcccactggtgtttttgtgcggcttggaa
gaaggcttgttcccgcatcaaatgtccgccgatgacccggcacggttggaagaagaacgc
cgcctgtgctacgtcggcattacccgtgcggaaaaagaactggtgatgagttacgccgaa
cagcgcatgttgcacgggcgcacccaattcaacccgccatcacgtttcttgcgcgaatta
ccgccggaattggtggaagaagtgcgcccgaaagtgaaaacctactccaccggctttggc
ggcaataaccaattccgcgcccctgccaatgcccccaaactggtgacgcgcaccaccaac
ctcaatgaaaccggctatcgcgtcgggcagcgggtgcatcatgccaaatttggcgatggc
gtgatcaccgattccgaaggggcgggcgcacattcgcgggtacaggtgaatttcaaagcg
gtgggcgttaaatggctggtgttgggttacgccaatttggaaaaaatctaa
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