Candidatus Thiothrix sulfatifontis: L3K52_06055
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Entry
L3K52_06055 CDS
T09924
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L3K52_06055 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsj03021
]
L3K52_06055 (rpoC)
03400 DNA repair and recombination proteins [BR:
tsj03400
]
L3K52_06055 (rpoC)
Enzymes [BR:
tsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L3K52_06055 (rpoC)
Transcription machinery [BR:
tsj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L3K52_06055 (rpoC)
DNA repair and recombination proteins [BR:
tsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L3K52_06055 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
UOG93291
LinkDB
All DBs
Position
1198171..1202361
Genome browser
AA seq
1396 aa
AA seq
DB search
MKDLLNFHKKEQETQDFDAIKVSLASPEVIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTQTKVRRDRMGHIDLASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFETFVVTEPGMTTLERSQLLSDEAYLEAIEEFGDEFEASM
GAEAILELLRSTDLKEEVARMREEIAETGSETKLKRLGKRLKLMEAFINSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPA
LRLHQCGLPKKMALELFKPFIFGKLQRRGLATTIKAAKKLVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMATNNVLSPANGEPIIVPSQDIVLGLYYMTRDAINAKGEGMIFADPLEVQRAYDTG
NVSLHAKVKVRITDSLKDEDGEFIKRTRVLDTTVGRALLTSIMPEGLPFELFNTVLKKKA
ISKLINEAYRRVGLKASVVFADQLMYTGYRYATRAGVSFCADDMMIPEKKAGLLAEAEDA
VLEIQKQFSSGLVTQGERYNKVVDIWASTNEKVAKAMMEKIGKQEVIDAEGNLVYQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDMVVTIDDCGTVQGIKMRPIIEGGDVVEALAERVL
GRVVAQDVTRGDEVLIPAGTFLDEAWVKQIDALAVDEIVVRSAITCETRYGVCAKCYGRD
LARGHIVNKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAESSIAVKSSGQVHLLN
VKTVRNKDGKLVVVSRSGELGVVDENGRDKERYKLTYGALLTIDHYDKVVAGQEVATWDP
HTHPIISEVAGQVSFSDFIDNVTVQTKVDEMTGLSSIEVMDPKNRPTAGRELRPTVRLLD
ERGDSVFFEGTKIPVQYPLPAGAIVSSTNGATVQVGEVVARLPQASSKTRDITGGLPRVA
DLFEARKPKDGAILAEKTGTISFGKETKGKQRVIITGEDGEHYEELIPKWRNLDVFEGEK
LNRGEVIADGEPNPHDILRLLGATALAEYQAREIQAVYRLQGVKINDKHIEVIVRQMMRK
VDVIDPGDSKFLRGEQTDYWRVVEENKRLDQEGKLKIVYERLLMGITKASLVTDSFVSAA
SFQETTRVLTEAAVRGARDELRGLKENVIVGRLIPAGTGLAYHDDRRSQRNEFAYERPVS
TETISFGEPLDMGSDD
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttattgaactttcacaagaaagagcaggaaacccaagactttgatgccatc
aaagtcagtttggcttcccctgaggttatccgttcatggtcgtttggcgaagtcaaaaag
cctgaaaccattaactaccggacatttaagccggagcgtgacggtttgttttgcgccaaa
atttttggcccagtcaaagactacgagtgcttgtgcggtaaatacaagcgtttgaaacac
cgtggcgtggtgtgtgagaaatgcggcgttgaagtgacccagaccaaagtgcgccgtgac
cgcatggggcatatcgatcttgccagcccggttgcgcatatctggtttttgaaatcattg
ccgtcccgcatcggtttgttgttggacatgacgttgcgggatattgaacgcattctgtac
ttcgagaccttcgtggtaacagagccgggcatgaccacgctggagcgttcgcagttgctc
agcgatgaagcttatctggaagccatcgaggagttcggtgacgaatttgaagccagcatg
ggcgcagaagcgattttagaattgctgcgttccaccgacctcaaagaagaagtcgccaga
atgcgcgaagagattgctgagacgggttctgaaaccaagctcaagcgtttaggcaaacgt
ctgaaattgatggaggcgttcatcaattccggcaataagcctgaatggatgatcatgacc
gtgctgcccgtgttgccgcccgatttgcgtccgctggttccgctggatggtggtcgtttc
gccacttccgacctgaatgatctgtaccgccgcgtgatcaaccgtaacaaccgtttgaag
cgtttgctggagctgaatgccccggacattatcgtgcgcaacgaaaagcgtatgttgcaa
gagtcggtggatgcgttgctcgacaacgggcgtcgcggtcgtgcaatcacgggttctaac
aagcgtccgctgaaatcgttgtcagacatgatcaagggtaagcaaggccgtttccgtcag
aacttgttgggtaagcgggtcgactactccggccgttcggttatcgtggttggccctgcg
ttgcgtttgcaccagtgtggtctgccgaagaaaatggcgctggaactgttcaagccattc
atttttggtaagttgcaacgccgtggtttagcgaccaccatcaaggcggcgaagaaactg
gtcgagcgtgaaacggcggaagtctgggatattctcgcggaagtcatccgtgaacatccg
gtcatgctcaaccgcgcaccgaccttgcaccgtttggggattcaggcgttcgagccgacc
ctgatcgaaggtaaagcgatccaattgcatccgctggtgtgttccgcgttcaacgcggac
ttcgacggcgaccagatggcggtacacgtaccgttgtcactggaagcgcagttggaagcg
cgtaccctgatgatggcgaccaataacgtcctgtcaccggcgaacggtgagccgatcatc
gtgccatcgcaagacatcgtattgggtctgtactacatgacccgtgatgcgatcaatgcg
aaaggcgaaggcatgatttttgccgatccgttggaagtgcaacgtgcttacgataccggc
aatgtgtcgctccacgccaaagtgaaagtgcggattaccgatagcctgaaagacgaagac
ggtgaattcatcaagcgtactcgcgtgctggataccacggtcgggcgtgctttgctgact
agcattatgccggaaggtttgccgtttgaattgttcaacacggtgttgaagaaaaaggcg
atttccaagctgatcaatgaagcttaccgtcgggtggggttgaaagcgtccgtcgtgttt
gctgaccaattgatgtataccggctaccgttacgcgacccgtgccggagtttctttctgt
gcggatgacatgatgatccccgaaaagaaagccggtttgttggcagaagcggaagatgcg
gtactggaaatccagaagcaattctccagcggtttggtgacacagggcgaacgttacaac
aaggttgtcgacatctgggcgagtaccaatgaaaaagtcgcgaaagcgatgatggaaaag
attggtaagcaggaagtcattgatgcggaaggcaacttggtttaccaagaatctttcaac
tccatttacatgatggcggattccggggcgcggggttctgcggcgcagattcgtcagttg
gcggggatgcgcgggttgatggcaaaaccggatggttccatcattgaaacgccgattacc
tctaacttccgcgaaggtttgaacgtcctgcaatactttatctcgacgcacggtgcgcgg
aaaggtttggcggataccgctctcaaaaccgcgaactctggttatctgacgcggcgtttg
gtcgacgtggcgcaagacatggtggtcacgattgacgattgcggcacagtgcaaggcatc
aaaatgcgtccgatcatcgaaggcggtgacgtggtagaagccttggctgagcgtgtattg
ggtcgtgtggtagcgcaagatgttacccgtggtgacgaagttttgattcccgccggtact
ttccttgacgaagcatgggtcaagcaaattgatgcgctggcagtggatgaaatcgtggta
cgttcagcgattacctgcgaaacccgttacggtgtgtgcgcgaaatgctacggtcgtgac
cttgctcgtgggcatattgtcaacaagggtgaggctgtcggggtcattgcggcgcaatcc
atcggtgaaccgggtactcagttgaccatgcgtaccttccacatcgggggtgcggcaagc
cggtcggcggcagaaagcagcattgcggtcaagtccagcggtcaggtgcatttgctcaac
gtgaaaacggtgcgcaacaaagacggcaaattggtggtggtatcgcgttccggcgaactg
ggcgtggtcgatgaaaatgggcgcgataaagagcgttacaagttgacctacggtgcgctg
ttgacgattgaccattacgacaaagtggtcgctggtcaggaagtagcaacgtgggatccg
catacccacccgattatttccgaggtagcgggtcaggtcagttttagtgacttcattgat
aatgtcacggtgcagaccaaagtggacgaaatgacaggtttgtcctccatcgaagtcatg
gatcctaaaaaccgtcctaccgccggtcgtgaattgcgcccaaccgtgcgtttgctggat
gaacgcggcgatagcgtgttctttgaaggcacaaagattccagtgcaataccccttgcct
gcgggcgccatcgtgagttccaccaacggtgcaaccgtacaggtcggtgaggttgtggca
cgtctgccgcaagcatcctctaaaacacgtgacatcacgggtggtttgccacgggttgcg
gacttgtttgaagcacgtaagccaaaagatggcgcgattctggcagaaaaaaccggcaca
atctccttcggtaaagaaaccaaaggcaagcagcgtgtcattatcaccggcgaagacggt
gagcattacgaagaactgattccgaagtggcgtaatctggatgtgttcgaaggtgagaaa
ctcaaccgtggtgaggtaatcgccgacggtgagccgaatccgcatgacattctgcgcttg
ttgggtgcgactgcactggcggaataccaagcgcgtgaaattcaagctgtttaccgtttg
cagggtgtaaaaatcaacgacaaacacatcgaggtcattgtgcgtcagatgatgcgcaag
gttgacgtgattgatccgggtgatagcaaattcctgcgcggcgaacaaaccgactactgg
cgcgtggtggaagaaaacaaacgtttggatcaagaaggcaagctcaaaatcgtttacgag
cggctgctgatgggcattaccaaagcatccttggtaacggactcctttgtgtcggcggcg
tccttccaagagaccacacgggttctgactgaggctgcggtacgcggtgcgcgtgatgag
ttgcgcggcttgaaagaaaacgtcattgtggggcgtttgattccggcgggtacgggcttg
gcctaccatgacgatcgccgtagccagcgcaatgaattcgcttatgaacgtccggtatcc
actgaaaccattagcttcggtgagccgttggacatgggttcagacgattaa
DBGET
integrated database retrieval system
