Candidatus Thiothrix sulfatifontis: L3K52_11375
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Entry
L3K52_11375 CDS
T09924
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3K52_11375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsj03019
]
L3K52_11375
Enzymes [BR:
tsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L3K52_11375
Messenger RNA biogenesis [BR:
tsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3K52_11375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
UvrD-helicase
AAA_22
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UOG90799
LinkDB
All DBs
Position
2243404..2244750
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AA seq
448 aa
AA seq
DB search
MLFSELGLSEPLLRAISEQGYDTPTPIQAQGIPAVLSGRDIMAAAQTGTGKTAGFTLPML
HLLSANGNAPKSNHIRALVLTPTRELAAQVGESVRDYGKNLPLTSTVVFGGVSANPQMMA
LRRGLDILVATPGRLLDLYDQNAVKFSQVEMLVLDEADRMLDMGFIRDIRKILALLPKRR
QTLMFSATFSDDIVALTKGLLNNPVQISVSPRNAAANTVTQSVFLVDKARKTALLSHLIR
ENQWEQVLVFSRTKHGANRLAEKLERDGVTAAAIHGNKSQGARTKALADFKQGNIRVLVA
TDIAARGLDIEQLPHVINFELPNVSEDYVHRIGRTGRAGATGEAISLVEPEEYGFLKGIE
KLIKQQLPREPLPTISVAPTRALTAAEIAKDAEADRPRPAQHRPANRRSSSQKSDVRKAA
GLPPVKKAEGAAASKPRRRRPNKPKAVA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgctattttctgaactcggcttgtccgagccgctgttgcgtgccatcagcgaacagggt
tacgacacccccactcctattcaagcacaaggtattcctgctgtcctgtctggtcgcgac
attatggcggcggcgcaaacgggtacgggtaaaaccgctggtttcactttaccgatgctg
catttgctctcggcgaacggcaatgcgcccaaatccaaccacatccgcgctttagtgctg
accccgacccgcgaactggcggctcaagtcggcgaaagcgtgcgcgattacggcaaaaat
ctgccgctgacctctaccgtcgtgttcggcggcgtgagtgctaacccgcaaatgatggcg
ttacgccgtggcttagacattctggtagcaacaccggggcgtttgctggatttgtacgac
caaaacgcggtgaagttttcccaagtggaaatgctggtgctggacgaagcggatcgcatg
ttggacatgggttttatccgcgacatccgcaagattctggcgttgttgccgaagcgtcgc
caaaccttgatgttctccgcgaccttctccgatgacatcgtggcactgaccaagggttta
ttgaataaccctgtgcaaatctcggttagcccacgcaacgcagcggcgaataccgtgacg
caatcggttttcttggtggataaagcgcgtaaaaccgcgttgttgagccacttaatccgt
gaaaatcagtgggaacaagtgctggtattctcgcgtactaaacacggcgcaaaccgtttg
gctgaaaagctagaacgcgatggcgtaacggcggcggcgattcacggcaacaaaagccaa
ggtgcacgtaccaaagcgttggctgatttcaagcaaggcaatattcgcgtgctggtagcg
actgacatcgccgctcgtggcttggatattgagcaattgccacacgtgatcaacttcgag
ttgccgaacgtgtcggaagattacgtgcatcgcattgggcgtaccgggcgtgcgggcgcg
acgggtgaagcgatttctttggttgagccggaagaatacggtttcctcaaaggcatcgaa
aagctcatcaagcagcaattgccgcgtgaaccgttgccgacgatcagcgttgcgccgacg
cgggcgttgactgccgccgagattgcgaaagatgcggaggcggatcgtccgcgccctgca
cagcatcgcccagcaaatcgccggagtagctcgcagaaaagtgatgtccgcaaggcggct
ggtttgccgccggtaaagaaagcggaaggtgcagcggcgagcaagccgcgtcgccgtcgc
ccgaataagccgaaagcggtcgcgtaa
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