Candidatus Thiothrix sulfatifontis: L3K52_12790
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Entry
L3K52_12790 CDS
T09924
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
L3K52_12790 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsj03400
]
L3K52_12790 (recD)
Enzymes [BR:
tsj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
L3K52_12790 (recD)
DNA repair and recombination proteins [BR:
tsj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L3K52_12790 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
UvrD-helicase
AAA_11
SH3_13
Helicase_RecD
SLFN-g3_helicase
nSTAND3
AAA_16
AAA_22
NPHP3_N
UvrD_C
AAA
ResIII
AAA_7
NTPase_1
Rad17
DEAD
T2SSE
Zeta_toxin
AAA_28
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
UOG91073
LinkDB
All DBs
Position
complement(2564142..2565689)
Genome browser
AA seq
515 aa
AA seq
DB search
MLLAPSVSHPLDEQLASLLKRLDGGSSSTRDLATLVRQVSAHTREGVIAVPRAALPDVDW
GTLQNSPVVGREGDYKPLILSDTHVWLYRYWHYEQRLTECIQTRRRDNSLLIISGGPGTG
KTTTVTRILADFIASGVSPTRILLAAPTGKAAMRMQESIRHTRQREQITCAMPEQSSTLH
RLLGFIPNRVGFRHGVHNPLAADAVIVDEASMIDISLMTHLFEAVPPSAKLILLGDKDQL
ASVETGSIFRDLCSGGALAAQMTLLQTSYRFSAADGVGQLAQAIREADEARLLAVLASAD
FADVTLDESQAGLDAAWLRHGWQDYIAAVKTGAVEAIFNTFNALRILTPLRQGRQGVETL
NGWVDGVMQRVLPVHTGAQRPWYVGRPVMVTQNDYRQNLFNGDIGIALPDANGDLRVWFP
TGEAGNYRAIAPIRLPAHETAWAMTIHKSQGSEFTRVLLVLPEMDDLPLLGRELLYTAVT
RAKQGIHILASRAMLGKALRTVTPPSSQLQERLQA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgctgttagcgccctctgtttcccatccgctggatgaacagcttgccagtttgctgaaa
cggctggatggtggttcttccagcacgcgagacctggcaacgctggtgcggcaagtgagt
gcgcatacccgtgagggcgtgattgctgtgccgcgtgcggcgttgccggatgtggattgg
ggaaccttgcagaactctcctgtcgtcgggcgggagggggattacaaacccttgatttta
agcgatacccatgtctggctgtatcgctattggcactatgaacagcggctgacggaatgc
attcaaacccggaggcgtgataattcgctgctgattatttccggggggccgggaaccggc
aaaaccaccaccgtgacgcgcattctggcggattttatcgccagtggcgtgtcaccgacg
cggattttgctggcagcaccgacgggcaaggcagcgatgcgaatgcaggagtcgattcgt
cacacccgtcagcgcgaacagattacgtgcgcaatgccggagcaatccagcactttgcac
cgtttgctggggttcattcccaatcgcgtcggatttcggcacggggtgcataaccctttg
gcagccgatgcggtgattgtggatgaagcgtcgatgatcgacatttccttaatgacgcat
ttgtttgaagccgtgccgccgtcagccaagctgattttgctgggcgataaagatcaattg
gcgtcggtggaaaccgggtcgattttccgcgatttgtgcagtgggggggcgttagccgcg
cagatgacgctgttgcaaaccagctaccgcttcagcgcggcggatggcgtggggcaattg
gcgcaggcgattcgtgaagcggatgaagcgcggttgttggcggtgttggcttccgccgat
tttgccgacgtgactttggatgaatcacaagcaggcttggatgcggcatggttgcggcat
ggttggcaggattatatcgcagcggtcaaaaccggcgcggtcgaggcaattttcaatacg
tttaatgcattgcgcatcctgactccgttgcggcaagggcggcagggggtggaaaccctc
aacggctgggtcgatggcgtgatgcagcgagtattgcctgttcacacgggggcgcaacgc
ccctggtacgtgggacggccggtcatggtgacgcaaaacgattaccgtcagaatttgttc
aacggcgatattgggattgccctgccggatgccaacggtgatttgcgggtgtggtttccg
acgggtgaggcggggaattaccgcgcaattgcgccgatccgtttgcctgcgcatgaaacc
gcgtgggcaatgacgattcacaagagccaaggctcggaatttacgcgggtgttgttggtc
ttgccggaaatggatgatttgccgttgctggggcgcgaattgctgtatacggcagtgacg
cgggcgaagcaggggattcacattctcgccagccgtgccatgttgggtaaggcgttacgc
acggtaacgccaccgtcgtcacagttgcaggaacgcttgcaggcttaa
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