Candidatus Thiothrix sulfatifontis: L3K52_14835
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Entry
L3K52_14835 CDS
T09924
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
L3K52_14835 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsj03400
]
L3K52_14835 (recB)
Enzymes [BR:
tsj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
L3K52_14835 (recB)
DNA repair and recombination proteins [BR:
tsj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L3K52_14835 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UOG91457
LinkDB
All DBs
Position
complement(2984769..2988296)
Genome browser
AA seq
1175 aa
AA seq
DB search
MQTLHAQSVPLIGTNLIEASAGTGKTWTISWLYLRLIAVYGLKVDKILVVTYTEAATAEL
RDRIRKRLADALAYLEQRPHAETYESLPLEAPLHDCIQRLQLALVSFDEAAVFTIHGFCK
RVLSENAFEARMPFETELVTNEDNLLTELTDKFWYQHFLKPDALHLRLLQKRGLTPDGLL
ATVRHFIGKPYLHTDIQPVTAEAFAQRQSAFESALQACQQQWASEREAIIGLLLSGALNG
STYSKRYVPNWSGKLDAYFANPLELPYETLERFATPALTEKTKDGKATPQHAFFTQVDAL
LAAHDALSEGEQAALEYLRLQLLHQLRAELPVRKQQLGILTFDDLLLHLRDALEQHPDFP
PRLALKYQAALIDEFQDTDPIQYEIFERIYRDKPEQPVFYVGDPKQAIYGFRGADIYTYL
KAAHSTSAHYTLQHNFRSHHDLLQALNHLFAQSDQPFRSDIRYEAVSAGKPQADLRVEPP
LPPIRLWDWNTLDEGYNSAAVQERIAEAVANDIARLLNAGREGIARIGERPVESRDIAVL
VRENQQGEQIKRALLARGIASVQKSRDSIFCTREASDFRAVLRAIAEPGNETALKQALVT
ELFGFTAEDLFALDENPALLEAELEAFHRWHKTWHSQGFMPMFRQWMLQRQRYAHLLALA
DGERRLTNLLHLAELIHTESRLQGHGMHALIRWLQQKAEAGEQDEAHELRLESDENLVQI
TTIHKSKGLEYGIVYCPYLWAERDAKASTWFSWYDRDTEAGISRLQAEAFASDAALKCFR
EAEQAESLRLLYVALTRAKYHCTIALVSGRINQFDYYSALGWLLLGKLPQGREILGKLRK
DGMQPDERQRLMHAQLTQLVEQSAGGISHEILPVEETRVCYQADSGEWQPSIRRYQPRYV
PVPKVGSFSGLTSGKDDERPDYDTLVATPVAERSRSDAFPRGAKAGSCLHKMLEELDFTQ
TLATQQDSVLLPALKRHGLPERWLPAGVQLLENTLNTPLPAINLRLCDLPKAQRLDELEF
YFPVERLRLKPLQTLLHHHLPTEWDAIHTAIDKLKFNDLTGYMKGFIDLVFAVDGRYFVV
DYKSNDLGAMSADYRFEVMQEAMAEHHYYLQYLIYCLALHRYLQQRLPGYDWEQHVGGAL
YLFLRGMMPEQAGSGVFFHKPAFALIEALDHLMGH
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccctccacgcccaaagcgtccccctcattggaaccaacctcatcgaagccagt
gctggcacgggtaaaacctggacgatttcatggctctacctgcgcctgatcgccgtttac
ggcctcaaagtcgacaaaattctggtcgttacctacaccgaagcagccaccgccgaatta
cgtgaccgcatccgcaaacgcctcgctgatgcactcgcttatctggaacagcgcccacac
gccgaaacctacgaatcgttgcccttggaagcgccgctccacgactgcatccaacgcctg
caactggcattggtgagtttcgacgaagcggcagttttcaccattcacggtttctgcaag
cgcgtgttatccgaaaacgcctttgaagcgcgaatgccgtttgaaaccgagttggtgaca
aacgaagacaatctgctcaccgaattaaccgacaaattctggtatcagcattttctcaag
cccgatgcactgcatttgcgcttgttgcaaaaacgcgggctgaccccggatggcttgctg
gcaaccgtgcgccatttcatcggcaaaccgtatttgcacaccgatattcagcccgtcacc
gcagaggcatttgcgcaacggcaaagtgctttcgagtctgccttgcaagcctgccagcaa
cagtgggcgagtgaacgtgaggcgatcatcggtttattgctgagtggcgcactcaacggc
agcacctacagcaagcgctatgtgccgaattggtcggggaaactcgatgcgtatttcgcc
aatccattggaattgccgtatgaaaccctcgaacgctttgccacccccgcgctgaccgaa
aaaaccaaagatggcaaagccacgccccaacacgcttttttcacgcaagtcgatgctttg
ctcgccgcccatgacgcgctatcggaaggcgaacaagccgcgctggaatacttgcgcctg
caattgctgcaccagttacgcgccgaattgcccgtgcgcaaacagcaactcggcattctc
acctttgacgatttgttgttgcacttgcgcgatgcgttggaacagcatcccgattttccg
ccgcgtttggcgctgaaataccaagcggcgttgattgatgaatttcaggacactgacccg
attcaatacgagattttcgagcgcatttaccgcgataaaccggaacagccggtgttttac
gtgggcgaccccaaacaggcaatttacgggtttcggggggcggatatttacacctacctc
aaagccgcgcacagcacgtcggcgcattacacgctgcaacacaactttcgttcgcatcat
gatttgctgcaagcgctcaaccacctgttcgcgcaatcggaccaacctttccgcagcgac
atccgctacgaagccgtcagcgccggtaagccgcaggcagatttacgagtcgagccacct
ctcccccccatccgcctctgggattggaacacactcgacgaaggctacaacagcgccgcc
gtgcaagaacgcattgccgaagccgtcgccaacgacattgcccgcctcttaaacgccggt
cgcgaaggtattgcccgaatcggtgaacgcccagtagaaagccgcgacattgcagtactc
gtgcgcgaaaaccaacagggcgaacaaatcaaacgtgctttgctggcacgcggcattgcc
agcgtacaaaaatcacgcgacagcattttttgtacccgcgaagccagcgatttccgtgcg
gtattgcgagccattgccgaaccgggcaatgaaaccgccctcaagcaagccctcgtcacc
gaactgttcggtttcactgccgaagatttattcgcactggatgaaaatcccgctttgttg
gaggccgaactcgaagccttccaccgttggcataaaacttggcattcgcaaggcttcatg
ccgatgtttcgccagtggatgttgcaacgccaacgctatgcgcatttattagccttggcg
gatggcgaacgtcgcctcaccaatttgttgcatttggcggaactcatccacaccgaaagc
cgcttgcaagggcatggaatgcacgcgctgatccgttggttacaacaaaaagccgaagcg
ggtgaacaagacgaagcacacgaactgcgcctagaaagcgacgaaaacttggtgcaaatt
accaccattcacaaaagcaaggggctggaatacggcattgtgtattgcccgtatttgtgg
gcggaacgtgatgcgaaagccagcacatggttcagttggtacgaccgtgacaccgaagcg
ggcatttcgcgcctgcaagccgaagcctttgccagtgacgcggcgctgaagtgtttccgt
gaagccgaacaagctgaaagtttacgcttgctgtacgttgcgctcacccgtgccaaatac
cattgcaccattgcactggtcagcgggcgcattaaccaattcgactactattcggcactc
ggttggctgttattaggcaagttaccgcagggcagggagattctcggcaaattgcgcaaa
gacgggatgcagcccgatgaacgccaacgtttgatgcacgcgcaattaacccaattggtg
gaacaatccgcaggcggcatcagccatgaaatcttgcccgttgaggaaacgcgcgtgtgt
tatcaagccgacagcggtgaatggcaacccagcatccgccgctaccaaccacgttacgtg
ccggttcccaaagtcggcagtttcagcggtttgacatctggcaaggatgatgaacgcccc
gactacgacacgcttgttgctaccccggtcgctgagcgcagtcgaagcgatgcattccca
cgcggcgcaaaagccggaagctgtttacacaaaatgctggaagaactcgacttcacccaa
acgcttgccacccagcaagacagcgtattgttacccgcgttgaaacgccacggcttgccc
gaacgttggctacccgcaggcgtacagcttctggaaaataccctcaatacgccgttgccc
gccattaatttgcgtttgtgcgatttgcccaaagcgcaacgccttgatgaactcgaattc
tatttcccggtagaacgcttgcgtctaaaaccgctgcaaaccttgttacaccaccacctg
cccaccgaatgggacgccattcacaccgcgatcgacaagctcaagttcaacgacctgacg
ggttatatgaaaggctttatcgacctggtatttgccgtagacggacgctattttgtggtg
gattataaatcgaatgatctgggcgcaatgtctgctgattaccgtttcgaggtgatgcaa
gaggcaatggcggaacaccattattacctgcaatacctgatctactgtttggcattgcac
cgttatttgcaacagcggttgccggggtatgactgggaacagcatgttggtggggcgttg
tatttgtttttgcgggggatgatgccggaacaggcaggctcaggtgtattttttcacaaa
ccggcgtttgccttgattgaggcgttggatcacttaatgggtcactga
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