Candidatus Thiothrix sulfatifontis: L3K52_15395
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Entry
L3K52_15395 CDS
T09924
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L3K52_15395 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsj03021
]
L3K52_15395 (rpoD)
Transcription machinery [BR:
tsj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L3K52_15395 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UOG91562
LinkDB
All DBs
Position
complement(3077475..3079349)
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AA seq
624 aa
AA seq
DB search
MSQEEQQQSSLKELIAKGKEQGYLTYAEVNDHLPDTIVDPEQIEDIVAMINDMGITVYEH
APDADSLLLNDEAVQADDEAAEEAAAALANVDGDFGRTTDPVRMYMREMGTVELLTREGE
IQIAIRIEEGLNEILRALAQYPASTEVLLEKASLIDSEEIRLTDIINGFVNPDEDLTAFQ
VAVPEELEEAAIAEEEAVAVVEEEDDEDAADPVDTGPDPEEARIKFAELRELYEASKTAC
ASNNQAAYTAAREAVALKFMEFRLAQPIIEQLTVQLNEIVDQIRQNERHIMKLCVQKGGM
ARQDFIDSFPQNETDLTWLDRYCVDKRGDHTRLKSFLPKIHEAQQELLVIQRDCNLSISQ
IKDINRSMSVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRKLLQEKGRE
ATPEELAEAMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGNILSPIESATT
SSLSEVTRDVLSSLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSDMLRSFLEYEPGVLPTN
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagaagagcagcagcagtccagcttgaaagagttaattgccaaaggtaaggag
cagggctacctcacctatgctgaggtcaacgaccaccttcccgataccatcgttgacccg
gagcagattgaagatattgttgcgatgatcaacgatatgggtataacggtgtatgaacat
gccccggatgccgattccctgttgctaaacgatgaagcggtgcaggccgacgatgaagcc
gcagaagaagccgctgccgccttagccaatgtggatggcgatttcgggcgcaccactgac
ccggtgcgcatgtacatgcgtgaaatggggacggtggagctgttgacccgtgaaggcgaa
atccagattgcgattcgcattgaagagggtttaaacgaaattttgcgagcattggcgcaa
tacccagcgtcgacagaagtgttgttggaaaaagccagcttgattgattccgaagaaatt
cgtttaaccgacatcattaacggttttgtgaacccggatgaagatctaacagcgtttcag
gttgccgtgccggaagagttagaagaagccgctattgcggaagaagaggcggtagcggtc
gtcgaagaagaagatgacgaagacgcggctgatccggtcgataccggccctgatcctgaa
gaagcgcggattaagtttgctgaactgcgcgaattgtacgaagcgtccaaaacagcttgc
gccagcaataaccaagcggcttacacagcggcgcgtgaggcggtggcactcaaattcatg
gaattccgtttagcgcaaccgatcatcgaacagttgacggtgcagttaaatgaaatcgtg
gatcagattcgccaaaatgaacgccacattatgaaattgtgcgtccaaaaaggcggcatg
gcgcgtcaggatttcatcgacagtttcccgcaaaatgaaaccgatttgacttggttagac
cgttattgtgtcgataaacgcggcgaccatacccgtttgaagagcttcttgccaaaaatt
cacgaagcccagcaagaattattagtcattcaacgcgactgtaatttatccatttcgcaa
atcaaagacattaaccgcagcatgtcagtcggtgaagccaaggcgcgacgggcgaaaaaa
gaaatggtcgaagccaacctgcgtttggtgatttccattgcgaagaagtacaccaaccgt
ggtttgcaattccttgatttgattcaggaaggtaatatcggtttgatgaaagcggtggac
aagtttgaataccgccgtggttacaagttctcgacttatgccacttggtggatacgtcag
gcgattacccgttcgattgcggatcaggcacgcactatccgcattccggtacatatgatc
gaaaccatcaacaagcttaaccgcatttcgcgcaaactgttgcaggaaaaaggtcgcgag
gccacgccggaagaattggctgaagcaatggatatgccggaagataaaattcgtaaagtg
ctgaaaattgccaaagagccgatttcgatggaaacgccgatcggtgacgatgaagattcg
cacttgggtgactttatcgaagatggcaatattttgtcacctattgagtctgcgaccaca
tccagtttgtcggaagtcactcgcgatgttttgtccagtttgacttcccgcgaagctaaa
gtgttgcggatgcgttttggtatcgacatgaacaccgaccatacgctggaagaagtgggc
aagcagtttgacgtaacccgtgaacgtatccgtcagattgaagccaaagccttgcgcaag
ttgcgtcatccgagccgttcggatatgcttcgcagcttcttagaatacgagccgggtgtc
ttaccgacaaactga
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