Candidatus Thiothrix sulfatifontis: L3K52_15895
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Entry
L3K52_15895 CDS
T09924
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsj03009
]
L3K52_15895 (rlmD)
Enzymes [BR:
tsj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
L3K52_15895 (rlmD)
Ribosome biogenesis [BR:
tsj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
L3K52_15895 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
Methyltr_RsmB-F
TRAM
RrnaAD
Methyltransf_11
PCMT
MTS
Cons_hypoth95
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_4
N6_N4_Mtase
Ubie_methyltran
Methyltransf_23
UPF0020
Motif
Other DBs
NCBI-ProteinID:
UOG91656
LinkDB
All DBs
Position
complement(3182417..3183760)
Genome browser
AA seq
447 aa
AA seq
DB search
MSRHRKPKSVQNSPLIDTTIESLTLEGHGVTHVDGKAVFIDGALPGETVTFRYTSHKQKY
DIGKVETILTPSPDRVEPRCEHFGVCGACSWQHLSLEAQIKHKQRAMLNNLKHIGKVEPE
TVFAPLTADGWAYRRKARLGAKWVRKKDKALVGFREKEGGFLAELKRCEILHPSIGEHLL
DFQALIASLDARESVPQIEVAVGDGDNATALIFRHMEELSEGDTDKLLAFGKQFNYQIYL
QPKGPETVHCIYPENPELYYEHPQFNTRVNFMPLDFIQVNQPLNRAMVARALELLAPEPT
DTVLDLFCGLGNFTLPLARMAAQVIGVEGEQTMVERARAAAHANGIMNTDYHVCNLMGDN
LQHEPWLKKNRYDKILLDPPRAGAKEIIAYMGKLNAGRIVYVSCDPATLARDTYELVHEH
GYRLVGAGVMDMFPHTSHVESIAVFEK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgagccgacacagaaaacctaaaagcgtacagaacagccccttaatcgacaccaccatc
gaatccctcaccctcgaagggcacggtgtcactcacgttgacggcaaagccgtgttcatc
gacggcgccttgccgggcgaaaccgtcaccttccgctacacctcgcacaagcaaaagtac
gacattggcaaggtcgaaaccatcctcacgccttcgccggatcgcgtcgaaccgcgctgc
gaacacttcggcgtatgcggcgcctgtagctggcaacacctgtcgttggaggcgcaaatt
aagcacaaacaacgcgccatgctcaacaacctcaaacacattggcaaagttgagccagaa
accgtgtttgcgcccttgacggctgacggctgggcataccgccgcaaagcgcgtctcggc
gcgaaatgggtacgcaaaaaagacaaagccttggtgggttttcgcgaaaaagaaggcggt
ttcctcgccgaactcaagcgctgcgaaattttgcaccccagcattggcgaacacttactc
gacttccaagctctgattgccagtctggatgcgcgtgagtctgtcccgcaaatcgaagtc
gctgtcggcgatggcgacaatgccaccgcgctaattttccgccacatggaagagctttcc
gaaggcgataccgataagctgttagcgtttggcaagcaattcaactaccagatatatttg
cagccgaaaggccccgaaacggtgcattgcatttaccctgaaaaccctgagctgtactac
gaacacccgcaattcaacacgcgggttaatttcatgccgctggacttcatccaagtcaac
cagccgctgaaccgtgcaatggtggcgcgtgccttggaattacttgcgcccgaaccgact
gataccgtgctggacttgttctgcggtttaggcaatttcaccctgccattagcacggatg
gcggcgcaagtgatcggcgtggaaggcgagcaaacgatggtggaacgtgcgcgtgcggcg
gctcatgccaatggcatcatgaataccgattaccacgtgtgtaacctgatgggtgacaac
ttgcagcacgaaccgtggttgaagaaaaaccgttacgacaagattttgctcgacccaccg
cgtgcgggcgcgaaagaaatcattgcttacatgggcaagctcaacgcggggcggattgtg
tacgtgtcgtgtgaccccgcaacgctggcgcgggatacgtatgagttggtgcatgaacac
ggctaccgtttggttggggcgggcgtgatggatatgttcccgcatacctcgcacgtcgaa
tccattgcggtgtttgaaaaataa
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