Candidatus Thiothrix sulfatifontis: L3K52_16970
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Entry
L3K52_16970 CDS
T09924
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3K52_16970 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsj03019
]
L3K52_16970 (pcnB)
Enzymes [BR:
tsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
L3K52_16970 (pcnB)
Messenger RNA biogenesis [BR:
tsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L3K52_16970 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
UOG91857
LinkDB
All DBs
Position
complement(3395199..3396509)
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AA seq
436 aa
AA seq
DB search
MLTPDNAVHVPPAVHHIPADKVCGRAKDVIRRLQKAGYEAYLVGGCVRDLLLGLVPKDFD
IATSAHPEEIRRLFNSCRLIGRRFRLAHIYYGRDYLEVATFRAPHDDSEDGGKVNDAGRI
IHDNVYGTLEEDVWRRDFTINALFYDPISDELLDFVGGLDDLRNGKIRLLGNPEQRFRED
PVRLLRAVRFAAKLNFEIEPATLACVRPMGILLEGVSSARLFDEIIKLLHSGCGWNTFRL
LREYNLLEYLLPLTYESLEDDDTGNFERMITLSLQNTDQRLAEGKSVMPAFLYAVLLWHE
VSVVAEELQARGMPELQAMTQASGDALHDQVDFTAVPRRYSNITREIWLLQSRFRYRDIR
RATTLLSNPRFRAAYDFMCLRAEAGEPVDDDAEWWTAFQSATHEEREAMCKGAAIKGSLR
RRKKRRKPNAVTKSAS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccccagacaacgcggtgcatgtgccaccggctgtgcatcatatccccgctgat
aaagtgtgcgggcgtgccaaagatgtaatcaggcgtttgcaaaaagcgggttacgaagcc
tatttagtgggtggttgtgtccgcgatttattgctcggcttagtccccaaagattttgat
attgcgaccagtgcgcaccctgaagagattcggcgtttattcaactcctgccgtttgatt
gggcgacgttttcgtttagcgcacatttattatgggcgtgattatttggaagtagcgacc
ttccgcgcaccccacgatgacagtgaagatggcggtaaggtcaatgatgccgggcgcatt
atccacgataatgtctatggcaccttggaagaagacgtgtggcggcgtgatttcaccatc
aatgctttgttttacgaccccattagcgatgaattgctggattttgtcggcggcttggat
gatttgcgtaatggcaaaatccgtttgctcggcaaccccgaacagcgctttcgtgaagac
ccggtgcggttgttgcgggcggtgcggtttgcggcaaaattgaattttgagattgaaccc
gcgaccttggcgtgtgtgcgcccgatgggaattttgttggaaggcgtgtcttccgcacgt
ttgttcgatgaaattattaagctgctgcacagcggttgtggttggaacactttccggtta
ttgcgcgaatacaatttgctggaatacttattgccgctgacttacgaaagccttgaggac
gatgacaccggcaatttcgagcgcatgatcacgttgtcgttacagaataccgatcagcgc
ttggcagaaggcaagtcggtgatgcccgcgtttttgtacgcggtattgttgtggcacgaa
gtttcggtggtggctgaagagttgcaggcacgtggaatgccggaacttcaggcaatgacg
caggcgtccggcgatgctttgcacgatcaggtggatttcaccgctgtgccgcgccgttac
agcaatattacccgcgaaatttggttgttgcagtcgcgtttccgttaccgtgatattcgt
cgcgccacgactttgctgagcaatccgcgttttcgggcggcgtatgatttcatgtgctta
cgtgccgaagccggtgagccagtcgacgatgatgcggaatggtggacggcgttccagagc
gctacgcacgaagagcgcgaagccatgtgcaaaggcgcggcaatcaaaggcagtttgcgc
cgccgtaaaaaacgccgtaaacctaacgctgtgaccaaatctgcttcatga
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