Candidatus Thiothrix sulfatifontis: L3K52_17545
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Entry
L3K52_17545 CDS
T09924
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsj03019
]
L3K52_17545 (hrpB)
Enzymes [BR:
tsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L3K52_17545 (hrpB)
Messenger RNA biogenesis [BR:
tsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L3K52_17545 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
ResIII
Flavi_DEAD
HA2_C
AAA_19
AAA_11
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UOG91969
LinkDB
All DBs
Position
3503371..3505944
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AA seq
857 aa
AA seq
DB search
MKTLCNELLRPIDAVLDDLKQALRERHEVVLEAPPGAGKTTRVPLALLDEPWLAGKKILM
LEPRRIAAKNAAHRMASLLNEGAGQTVGYRMRLDHKISRQTRIEVITEGILTRQLQQDPS
LEGVGLVIFDEFHERNLDSDLALSLCLKGRELFRDDSNPLKLLVMSATLDSVAIASLLDD
APVVRSAGRTYSVNIRYGQAAKPNERIVERMVATLRQALTDNPDSSILAFLPGQGEIHRT
TEALGAWLVERKIRGVHLRPMYGNLTLDEQQQAIAPLTGSSAGERKVVLATNIAETSLTI
EGVDVVVDSGLVREARFDPGTGMTGLHTTRISRASSTQRAGRAGRLAPGVCYRLWTESQQ
EQLAAHNTPEILRADLAPLALQLLQWGVDDPTELRWLDVPPSGLWQQALDLLETLGAIAR
KGKATVLTAHGQVMCNLPVHPRLAHLLICGAQAGHLNAAATLASLLSERNPFSQDNPDIS
QPLDILAGTSRCPYPQQGWLQRTRQLANQFVEQIRSQTLPESGVSFLLPATQIHGYLLAC
AYPDRIARRRHSGGYQLANGRSADLPDKHALGNQSWLAIAEVSSMVGKSSDIIRSAAALD
DKLFASALADQVREQTVVEWDNKAGRFIAEAQQKIGALVLQRKALQAVPGEAKSAALIGF
IRKQGLDVLPWQAEQEQWCARVNLLRSVEPEQQWPDISRANLLVTLEDWLAPYLEVVNVL
ADFKKLDLTSILSSLLPWDMQQRLEQLAPKRLEVPSGHDIAIDYSQAPPVLAVKLQEMFG
CQQTPTIANGRVALLVHLLSPAGRPLQITQDLAGFWRTSYHEVKKDMKGRYPKHPWPDDP
LQAVATRKVKRLLKDSC
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgctatgtaacgaactactccgccccattgatgccgtcctcgacgacctcaaa
caagccctgcgtgaacgccacgaagtcgtgctggaagccccaccgggcgcgggcaaaacc
acccgcgtcccactcgccttgctggatgagccgtggcttgccggtaaaaaaatcctcatg
ctcgaaccgcgccgcattgccgccaaaaatgccgcgcaccgcatggcaagcctgctgaac
gaaggtgcaggccaaactgtcggctaccggatgcgcctcgaccataaaatcagccgccag
acccgcatcgaagtcattaccgaaggcatccttacccgccagttgcagcaagacccatcg
ctggaaggcgttggtttggtcattttcgacgaatttcacgagcgcaatctcgattccgac
ctcgccctcagcttgtgtctgaaagggcgcgagctgttccgcgacgacagcaatccgctg
aaactgctggtgatgtccgccaccttggatagcgttgcgattgccagcttgctggatgac
gcacccgtagtacgcagtgcaggccgcacttattcggtaaacatacgctatgggcaagca
gccaaacccaatgagcgtatcgttgagcgcatggttgccaccttgcggcaagccttaacc
gacaaccctgacagcagcatcctcgccttcctgcccggtcaaggcgaaattcaccgcacc
accgaagctctcggcgcatggctggtggaacgcaaaattcgcggcgtgcatttacgcccc
atgtacggcaacctcacgctggacgaacagcaacaagccattgcgccgctcacaggttca
agtgctggtgaacgcaaagtggtgctggcaaccaacattgctgaaaccagcctgaccatc
gaaggcgtggatgtggtggtggattccgggctggtgcgcgaagcccgtttcgaccccggc
acgggcatgaccggcttgcacaccacccgcatttcccgcgcttccagcacccaacgcgcc
gggcgtgcaggccgccttgccccaggtgtgtgctaccggctttggacggaaagtcagcaa
gaacaacttgccgcgcacaatacccccgaaatcttacgcgctgatctcgccccactcgcc
ctgcaattgctgcaatggggggtggatgatccgacggaactgcgctggctggatgtgccg
ccttccggtctttggcaacaagcactggatttgctggaaacgctcggcgcgattgcacgc
aagggtaaagccacggtgctgacggcacacgggcaagtgatgtgcaatttacccgtgcat
ccgcgtctcgcccacctgctgatttgcggcgcacaagccggacacctgaacgccgccgcc
acccttgccagcctgctttccgagcgtaacccgttcagccaggataatcccgatattagc
caaccgctggacatattggcaggcacaagccgttgcccgtatccacaacagggctggtta
cagcgtacccgccaactggcaaaccagtttgtggaacaaatccgcagccagacattgccg
gaaagtggcgtgagctttttgctgcccgccacacaaattcacggctatttactggcctgt
gcctaccccgatcgaattgcccgacggcggcattccggcggctatcaacttgccaacgga
cgcagtgccgacctgcccgacaaacacgcgcttggcaatcaatcgtggctggcgattgcg
gaagtcagcagcatggtgggcaaaagcagcgacatcatccgctccgccgccgcgctggat
gacaagctgtttgccagcgcattggctgatcaggtgcgcgagcaaaccgtggtggaatgg
gataacaaagcggggcgtttcatcgccgaagctcagcaaaaaatcggcgcattggtgtta
cagcgcaaagccctgcaagccgtgccgggtgaagccaaaagtgccgccctgatcggtttc
atccgcaagcaagggctggatgtgttgccttggcaggcggaacaggaacaatggtgcgca
cgggtgaacctgttacgcagcgtagaaccggaacagcagtggcctgatatcagccgtgcc
aatttgctggtgacgctggaagattggcttgccccgtatctggaggtggtcaatgtgttg
gcggatttcaaaaagctcgatttgaccagcatcctcagcagcttgttaccgtgggacatg
caacaacgccttgaacaacttgctcccaaacgcttggaagtgccatccggtcatgacatc
gccatcgactacagccaagcgccgccggtacttgcggtgaagttgcaggaaatgtttggt
tgccaacaaaccccgaccattgccaatggcagggtcgcgctgctggtgcatctgctgtct
ccggcgggcaggccgttgcagattacgcaggatttggcggggttttggcgtacttcttac
catgaggtgaaaaaggatatgaaagggcggtatcccaaacatccgtggccggatgacccg
ttgcaggcagtggcgacgcgcaaggtcaagcggctgctgaaggattcatgctag
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