Candidatus Thiothrix sulfatifontis: L3K52_18080
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Entry
L3K52_18080 CDS
T09924
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3K52_18080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsj03019
]
L3K52_18080
03009 Ribosome biogenesis [BR:
tsj03009
]
L3K52_18080
Enzymes [BR:
tsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L3K52_18080
Messenger RNA biogenesis [BR:
tsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3K52_18080
Ribosome biogenesis [BR:
tsj03009
]
Prokaryotic type
rRNA helicases
L3K52_18080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_30
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
UOG92073
LinkDB
All DBs
Position
3611010..3613049
Genome browser
AA seq
679 aa
AA seq
DB search
MSPETNTPPTFAEFGLAAPVLQAVLDLGYETPSAIQAETIPYLLAGRDVLGQAQTGTGKT
AAFALPLLSRLDMSKTGPQILVLAPTRELAIQVAEAFQKYAGKLPGFHVMPIYGGQDYRT
QFRQLERGVQVVVGTPGRVMDHLRRGSLKLDGLQALVLDEADEMLRMGFVDDIEWIMEQT
PPQRQIALFSATMPPAIHRIAQSYLTDPAEVKIKVKTTTADTIRQRYWLVSGLHKLDALT
RILEAEPFDAVILFVRTKNETVELADKLQARGYNAVALNGDIAQNVRERTIDQLKKGKID
ILVATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERHLL
RNIERATRKPIDLMELPSTDVINNMRIAQFSQRITDTLAEEGLDFFSQLLEVYEREHNVP
ALEIAAALAKMLQGDSPLLLEERKNHPAFNPNAAREREQEQRPGKRKSNAANSAFSSDDD
TIPMERFRIAVGRSHGVKPGNIVGAIANEAGLDSRYIGYIEIQDDCSLVDLPAGMPKDIL
HELRTARVAGQLLNIEPAGEAAADYSPNKPSSGGQRRDRGGDDRRPPQRRDGPPPRRDGG
GAARGGDRPDRRPRTEKERAPFAGGDKPRFADEKPKFSADKPRFADEKPKFGGDKPPARK
PVIKKTGTPNKGKGKPENL
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtccccagaaacaaacacacctcccacgttcgccgaattcggtcttgccgcccccgtg
ctgcaagccgtcctagacctcggctatgaaaccccgtcagccattcaagctgaaaccatc
ccttacctgctggcaggtcgcgacgtcctcggacaagcgcaaaccggcacaggtaaaact
gctgcattcgccctacccctgctctcacgattggacatgagcaagaccgggccacaaatt
ctcgtcctcgcgccgacccgcgaactggcgattcaagttgccgaagcgtttcagaaatac
gcgggcaaactccccggtttccacgtcatgccgatttacggcggacaagattaccgcacg
caattccgccaactcgaacgcggcgtacaagtcgtggtcggcacaccgggtcgcgtcatg
gatcacctgcgccggggttcactcaaactcgacggcttgcaagcactggtgctggatgaa
gctgacgaaatgctgcgcatgggcttcgtcgatgacatcgaatggatcatggagcaaacc
ccgccgcaacgccaaattgcgctgttctccgcgaccatgccacccgcgattcaccgcatt
gcgcaaagctatttgactgaccctgccgaagtcaaaatcaaggttaaaaccaccaccgcc
gacaccatccgccagcgttactggttggtcagcggcttgcacaagctcgacgcgctgacc
cgcatcctcgaagctgaaccgtttgatgccgtcattctgttcgtgcgtaccaaaaatgaa
accgtggaactggcggacaaactgcaagcacgcggttacaacgcggtcgccctcaacggt
gacattgcgcaaaacgtgcgcgaacgcaccatcgaccagttgaagaaaggcaaaatcgac
atcctcgtcgccaccgacgtagccgcacgcggcttggatgtggaacgcatcagccacgtt
atcaactacgacattccgaccgacaccgaatcctacgttcaccgcatcggtcgtaccggg
cgtgcgggacgtagcggcgaagcgattttgttcgtatccccgcgtgaacgtcacttactg
cgcaacatcgaacgcgctacccgcaaaccgattgatctgatggaattaccctccactgat
gtcatcaacaatatgcggattgcgcagttcagccaacgcatcaccgacacgctggcagaa
gaaggcttggatttcttctcgcaattgctggaagtgtacgagcgcgaacacaatgttccg
gcactcgaaattgcggcggcacttgccaaaatgctgcaaggcgattcgcccttgttgctg
gaagagcgtaaaaatcacccggctttcaacccaaatgcggcgcgtgaacgtgagcaagaa
caacgccccggcaagcgcaaatccaacgctgccaactccgcgttcagcagcgacgacgac
accattccaatggaacgtttccgcattgcggttgggcgttcgcacggcgtcaaaccgggt
aatatcgtcggtgcgattgccaatgaagcaggcttagacagccgctacatcggttatatc
gaaattcaagacgattgcagcttggtcgatttgcctgccggaatgccgaaagacattctg
cacgaattgcgcaccgctcgcgtcgctgggcaattgctgaatatcgaaccagcgggtgaa
gcggcagcggattattcccccaacaaacccagtagtggcggtcaacgccgtgaccgtggt
ggcgatgaccgtcgcccgccacaacgtcgcgatggcccaccgccgcgccgtgacggtggt
ggtgcagcgcgtggcggtgatcgccccgatcgtcgcccacgcactgaaaaggaacgtgcc
ccgtttgcaggcggtgacaagccgcgctttgccgacgaaaaacccaagttcagtgctgac
aagccgcgctttgccgacgaaaagcccaagtttggcggtgacaaaccaccggcacgcaag
cctgtcatcaaaaaaacaggcacaccgaataagggaaaaggaaaaccagaaaatctttaa
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