Candidatus Thiothrix sulfatifontis: L3K52_18150
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Entry
L3K52_18150 CDS
T09924
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
tsj
Candidatus Thiothrix sulfatifontis
Pathway
tsj02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
tsj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
L3K52_18150
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
tsj02022
]
L3K52_18150
02035 Bacterial motility proteins [BR:
tsj02035
]
L3K52_18150
Two-component system [BR:
tsj02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
L3K52_18150
Bacterial motility proteins [BR:
tsj02035
]
Pilus system
Twitching motility proteins
L3K52_18150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
VpsR
AAA_16
Mg_chelatase
HTH_23
HTH_28
Pre_tape_measure
AAA
HTH_50
AAA_19
FleQ
AAA_22
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
UOG92086
LinkDB
All DBs
Position
3626847..3628301
Genome browser
AA seq
484 aa
AA seq
DB search
MTEQTVLIIDDEPDIRELLEITLLRMGLDTITAGDVESALNQIENYHPQLCLTDMKLPDG
SGIDIVRYLQKNHPHIPVAVITAFGSMDTAVESLKAGAYDFVSKPVDLPKLRELIQTALK
LSAGKGKQPTPADDDSDTHSSSILGNSPAMQQLKATIHKLARSQAPVYIHGESGSGKELV
AHQIHQQGSRVKAPFVPVNCGAIPENLMESEFFGHKKGSFTGAMADKQGLFQAAHKGTLF
LDEVADLPLTMQVKLLRAIQEGAVKPVGGLEEIPVDVRILSATHKSLEHEVAAGHFRQDL
YYRLNVIKLKVPPLRERQEDILLLADFFLQKIAERWQMPPIRLSPAARQELGAYGFPGNV
RELENVLERASTLCDNNTIQPDDLQLPVAVVTPHPADSSSLRLPFDFAQGTRSGNDGGIE
EKKVAKGEVEALPAWNPVDEEAERDLILRALEQTRWNRTKAAEVLGMSFRQLRYRIQKYG
LDEG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaaaccgtactcatcattgatgatgaacctgacatccgtgaactgttggaa
atcaccctgttacgcatggggctggataccattacggctggcgacgtggaaagcgctctc
aaccagatcgaaaattaccatccgcagttgtgcctgaccgatatgaaattgccggatggc
agcggcatcgacatagtgcgttacctgcaaaaaaatcacccacacattccggttgccgtg
attacggcctttggcagcatggatacggccgtagaatcactcaaagcgggcgcttacgat
ttcgtgtccaaacccgtggatttgccgaaactgcgcgaattgattcaaaccgcgctcaaa
ctttccgctggtaaaggcaaacaacccacgccagccgatgacgatagcgacacccacagc
agcagcattttgggcaattctccggcgatgcagcaactcaaagcgaccatccacaaactg
gcgcgtagccaagcgccagtgtacatccacggcgaatcgggcagcggtaaggaattggtc
gcgcaccagattcaccagcaaggttcgcgggtcaaagcgccgtttgtgccggtcaactgc
ggggcgattcctgaaaatctgatggaaagcgaatttttcgggcacaaaaaaggcagcttt
accggcgcaatggcggataagcaggggctgtttcaagcggcgcacaaaggcacgttgttt
ctggatgaagtcgcggatttgccgctgaccatgcaggtcaaattgctgcgggcgattcag
gaaggcgcggtcaaacccgtggggggcttggaagaaatcccggtggatgtgcgaattctc
agtgctacccacaagagtttggaacacgaagtcgcggcggggcatttccgacaggatttg
tattaccgcctgaatgtgatcaagttgaaagtgccgccgctgagggaacgccaggaagat
attttgctgttggcggactttttcttgcagaaaattgcggaacgttggcagatgccaccg
atacggttgtcgcctgcggcgcggcaggagttgggggcgtatgggtttccggggaatgtg
cgcgagctggaaaacgtgttggagcgggcgagtacgttgtgtgataacaatacgattcag
ccggatgatttgcagttgccggtggcagttgttacccctcaccctgcggactcttcttcc
cttcgacttcccttcgacttcgctcagggaacgcgctcagggaacgatggtgggatagaa
gagaagaaggtggcaaagggagaagtggaggcgttaccggcttggaatccggtggatgag
gaggcggagcgtgatttgattttgcgggcattggagcagacgcgctggaatcgcaccaag
gcggcggaagtgttggggatgtcgttccggcagttgcgttatcggattcagaaatatggg
ttggatgagggctaa
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