Treponema socranskii subsp. buccale: HRI97_02895
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Entry
HRI97_02895 CDS
T08383
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsk
Treponema socranskii subsp. buccale
Pathway
tsk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HRI97_02895 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsk03021
]
HRI97_02895 (rpoC)
03400 DNA repair and recombination proteins [BR:
tsk03400
]
HRI97_02895 (rpoC)
Enzymes [BR:
tsk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HRI97_02895 (rpoC)
Transcription machinery [BR:
tsk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HRI97_02895 (rpoC)
DNA repair and recombination proteins [BR:
tsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HRI97_02895 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RnfC_N
PAH_ZNF598
Motif
Other DBs
NCBI-ProteinID:
UTD02086
LinkDB
All DBs
Position
649529..653788
Genome browser
AA seq
1419 aa
AA seq
DB search
MRDIQDFDSLKIKLASPDTIRAWSYGEVKKPETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSIRYKGVICDRCGVEVTDFKVRRERTGHIELAAPVSHIWYYRSVPSRMGLLLDL
QVAALRSVLYYEKYIVIEPGDTDLKKMQLLTEDEYNEARERYGETFTADMGAEAIKTLLE
GLDLDALAAELRAKMIEKGAKSDKRLLKRIEIVEHFRESGNKASWMILDVVPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLQQLSAPDIIIRNEKRMLQEAVDALFDNSK
RKRVVKGASNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELHLWQCGLPTK
MALELFKPFIMKKLVDKDVVFNIKKAKTLVEQESPEVYAILDEVVREHPVMLNRAPTLHR
LGILAFEPILVEGKAIKLHPLACKSFNADFDGDQMAIHVPLTQAAQMECWTLMLSARNLL
DPANGNTIVYPSQDMVLGIYYMTSVKPNAKGTGRRFSSGDEARMAAEYGSIEWQAAIKAP
VQKAPYNGKVIETTAGILAFNEEMPDEVDYVNEQMDDKKLRKMIEHVYHTKGPWLTIKML
DAIKACGYKNATFYGATLSMDDILVPDEKKKMVDKANKEVEEIVGQYSKGIITAEERYQK
VTDLWARTNDELSKIMMDNLAKDKDGFNTIYMMAKSGARGSPKQISQLAAMRGLMAKPNG
DIIELPIRSNFKEGLSVIEFFISTNGARKGLSDTALKTADAGYMTRRLVDVAQDVVVNED
DCGTINGIDYTAIKDGDEVLVPLSERIVGHYTIERVIHPITGELLCDVNRYIDGDLAKKI
DEAGVEKVKLRTVLTCEAHHGICVRCYGQNLARNKIVEIGEAVGIIAAQSIGQPGTQLTL
RTFHSGGAAEKTTEENHIVLKFNAFIKEVTGTHVEVKGGKWLFTRKGFMTVIRIVDEIKI
GKDASVKVKGGDRILKGSVVMTTKSGEVKASADAKIMIIGDTVYLTSSEVRVEIANGSTI
YVKAGDIVAAGKPIGEFDPFSEPIIAESDGYVHFEDIIVGSTLEERHDMQTGNIERIITD
LHLDVKQPRILITDEAGNELGSYYLPAGAVLNVDDKKQIAAGVTLARLPKVAAKSSDITG
GLPRVSELFEARKPKNPCVLAKISGLVKFKGITKGKRMVTIEDEFGKVHDHAVPMNKRML
VRDGDRVEAGEPLCDGSPSPHDILAILGENALQNYLMDEIQQVYRAQGVDINDKHIGIIV
RQMLRKVEIVAVGDTHFIYGQQVDKYKFHEENKRVKDEGGQPATGRPMFQGITKASLGVD
SFISAASFQETTRVLTNAAISGSTDYLHGIKENVAIGHMIPAGTGIRNYRHIKLFDGSDR
DLDIQMDEILERRRIEKEQEALRMTEEDAAFDAEEPEAD
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgatattcaggatttcgacagccttaaaataaaactcgcttctcccgatacgatc
cgcgcgtggtcgtacggcgaagtgaaaaaacccgagacgataaattaccgcacgctgcgt
ccggaaaaagacggactcttttgcgagcgcattttcggcacgacaaaagaatgggaatgc
tattgcggaaaattcaaatcgatccgctataagggcgtcatctgcgaccgctgcggcgtc
gaagtgaccgattttaaagtgcgccgcgaacgcacgggacatatcgagcttgcagctccg
gtgagccatatctggtattaccgctcggtgccgagccgcatgggactcctgctcgatctg
caggttgcggctttgcgctcggtgctttattacgaaaagtacatcgtcatagaaccgggc
gacaccgatttgaaaaagatgcagcttttgaccgaagacgaatacaacgaagcgcgcgaa
cgctacggtgaaacttttaccgcggatatgggcgccgaagcgattaaaacgctgctcgaa
ggactcgacctcgatgcgctcgctgcggaactccgcgcgaagatgatcgaaaagggcgca
aaaagcgacaaacggcttttaaagcgtatcgaaatcgtggagcacttccgcgaatcgggt
aacaaagcgagttggatgattttggacgtcgttcccgtcatcccgccggatctgcgcccc
atggtgcagctcgacggcggccgctttgcgacgtcggatttgaacgatctctaccgccgc
gtcatcaaccgcaacaaccgtttaaagcggctgcagcagctttcggcacccgatatcatc
atcagaaacgaaaagcgtatgctgcaggaagcagtcgatgcgctcttcgacaacagcaaa
cgaaagcgcgtcgtaaaaggtgcgtcgaaccgtccgctcaaatcgatcagcgatatgctg
aagggaaaacagggacgcttccgccaaaacctgctcggaaagcgcgtcgattattcggga
cgttcggtcatcgtcgtcgggccggaactgcacttgtggcagtgcggacttccgacaaag
atggcgctcgaactcttcaagccctttatcatgaaaaaactcgtcgataaagacgtcgtg
ttcaatatcaaaaaagcgaaaacgcttgtcgaacaggaatcgccggaagtgtacgcgatc
ctcgatgaagtcgtgcgcgaacatccggttatgctgaaccgcgcgccgacgctgcaccgg
ctcggcattctcgccttcgaaccgatactcgtcgaaggcaaagcgatcaaactgcacccg
ctcgcgtgcaaatcgttcaacgcggacttcgacggcgaccagatggcgatccacgtgccg
ctgacgcaggcggcgcagatggagtgctggacgctcatgctttctgcgcgcaacctgctc
gatcccgcaaacggcaatacgatcgtctatccgtctcaggacatggtgctcggcatctac
tatatgacgtcggttaagccgaatgcgaagggtacgggaaggcgcttcagctccggcgac
gaagcgcgcatggccgccgaatacggcagcatcgaatggcaggcggcgatcaaagcgccc
gtccaaaaagcgccctacaacggcaaagtgatcgaaacgacggcgggcatcctcgcgttc
aacgaagaaatgcccgacgaagtcgactacgtgaacgagcagatggacgacaaaaagctg
cgcaaaatgatcgagcacgtgtatcacacgaagggcccctggctcacgataaagatgctc
gacgcgatcaaagcgtgcggctataaaaatgcgactttctacggcgcgacgctctccatg
gacgatatcctcgtccccgacgaaaagaaaaagatggtcgacaaagcgaacaaagaagtc
gaagagatcgtcggacagtattcgaaaggtatcatcaccgccgaagagcgctatcaaaaa
gttaccgacttgtgggcgagaacgaacgacgagctctcgaagataatgatggacaacctc
gccaaagataaagacggtttcaatacgatttatatgatggcaaagtcgggtgcgcgcggt
tctccgaaacagatttcacagcttgcggcgatgcgcggtcttatggcaaaaccgaacggc
gacatcatcgaactgccgatccgctcgaactttaaagaaggtttgtccgttatcgaattc
tttatttcgacgaacggtgcgcgaaaaggtttgtccgacaccgcgctcaaaaccgcggac
gccggttatatgacgcggcgcctcgtcgacgttgcgcaggatgtcgtcgtcaacgaagac
gactgcggcacgatcaacggcatcgactatacggcgatcaaagacggagacgaagttctc
gttccgctttccgagcgcatcgtcggccactatacgatcgagcgcgtcatccatccgatt
accggagaacttttgtgcgatgtcaaccgttacatcgacggcgatttggcaaaaaaaatc
gatgaagcgggcgtcgaaaaggtaaagctgcgcaccgtactcacgtgcgaagcgcaccac
ggtatctgcgttcgctgctacggacaaaacctcgcgcggaataaaatcgtcgaaatcgga
gaagccgtcggtatcattgcggcgcagtcgatcggacagccgggtacccagcttacgctc
agaaccttccactcgggaggggctgccgaaaagacgacggaagaaaatcacatcgttctc
aaattcaacgcctttatcaaagaagtcacgggtacgcacgtagaagtaaaaggcggcaag
tggctctttacgcgtaaaggctttatgaccgtcatccgcatcgtcgatgaaatcaaaatc
ggcaaagacgcgtccgtcaaagtaaaaggcggagatcgcatcttaaagggcagcgtcgtt
atgacgacgaaaagcggagaagtgaaggcgtccgccgatgcgaagattatgattatcgga
gatacggtctatttgacgagcagcgaagtgagagtcgaaatcgcaaacggttcgacaatc
tatgtcaaagcgggcgatatcgtcgctgcaggaaagccgatcggagaattcgatccgttc
agtgaaccgatcatcgccgaaagcgacggctacgtgcacttcgaagacatcatcgtcggt
tcaacgctcgaagagcggcatgatatgcagacgggaaacatcgaacgcatcatcaccgat
ttgcatttggacgtaaagcagccgcgcattctcatcaccgatgaagcgggcaacgaactc
ggaagctattatctgccggcgggcgccgttttgaacgtcgacgacaaaaagcagatcgcc
gcgggcgttacgctcgcaagattgccgaaagtcgccgcaaaatcgagcgatatcaccggc
ggtcttccgcgcgtttccgaactcttcgaagcgcgaaagccgaaaaatccgtgcgtgctt
gcgaagatttcgggacttgtcaagtttaagggaattaccaaaggcaagcgtatggtgacg
atcgaagacgaattcggtaaagtgcacgatcacgccgttccgatgaacaagcgcatgctc
gtgcgcgacggcgaccgcgtggaagcgggagagccgctgtgcgacggttcaccgagtccg
cacgacatcctcgccatcctcggtgaaaatgcgctgcagaattatcttatggatgaaatc
cagcaggtgtaccgcgcgcagggtgtcgatatcaacgacaagcacatcggtattatcgtg
cggcagatgctgcgcaaagttgaaatcgttgcagtcggcgatacgcactttatctacgga
cagcaagtggacaaatacaaattccacgaagaaaataagcgcgtaaaagacgaaggcgga
cagccggctacgggccgcccgatgttccagggaattacgaaagcctctctcggcgtcgat
tcctttatttcggcggcatcgttccaggaaaccacacgcgtactcacgaacgccgcaatt
tccggttcgaccgattatctgcacggtatcaaagaaaacgtcgcaatcggtcacatgatc
cccgcaggaacgggcatcagaaattaccgccatatcaagcttttcgacggaagcgacagg
gatttggatatccagatggatgagatcctcgaacgccgccgtatcgaaaaagagcaggaa
gcgctccgtatgacggaagaagatgcggctttcgatgcggaagagccggaagcggattga
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integrated database retrieval system
