Treponema socranskii subsp. buccale: HRI97_05560
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Entry
HRI97_05560 CDS
T08383
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tsk
Treponema socranskii subsp. buccale
Pathway
tsk03410
Base excision repair
tsk03430
Mismatch repair
tsk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HRI97_05560 (recJ)
03430 Mismatch repair
HRI97_05560 (recJ)
03440 Homologous recombination
HRI97_05560 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsk03400
]
HRI97_05560 (recJ)
DNA repair and recombination proteins [BR:
tsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HRI97_05560 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HRI97_05560 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HRI97_05560 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UTD03879
LinkDB
All DBs
Position
complement(1245336..1247483)
Genome browser
AA seq
715 aa
AA seq
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MKEWRKKEVSREAVKALCDLYGVDALTASIMVRRGITQANDVLYFKESDLRFLHNPFLFS
NMEDAVDRITSAKEEGEKILIFGDRDVDGVSATAILYTYLQKSGYDVSWRLPVGDDAYGL
SMQAVDDFAKDYGSLIITVDCGISNAAEIAHARELGIDVIVTDHHNPPETLPDACAILDP
KVKDSGYPFADISGAAVSYKLVEALRFSESELYKAEIALLNVRPAETEGVYIDCVKVRNL
VRTASLSEHIRGGGISIAQTKLPEFLKGAQIFTWNEEAVKKQLSDIFGRGVEFNTADLRP
EVSKLIPSLSRMSLLAAKDASRIAKYSAHPISEIDGFYNIFVSFAEKKIETKQILADRQN
DLELVAVAAIADIMPLKDENRILVKAGLDAINEGKVRPGLVELFSRLSVAGKKISSSDLS
WTVIPALNAAGRMGESNAALEMLISPDADVREKRAEEIIALNEKRKAFVGDAASVTAIQA
EESFERCGKKLCVVVDERINKGVTGILASRLMAKYKTPAIVITFIDGDVAVGSMRSCRGL
NATDFLASLGDIFISYGGHNCAAGFSFPKEKLPLFTERLKTAALHIVLDPESDTLDVDAE
LPAPYLSPAILSVVDAFEPFGEGNREIVFLSKALPVTDATLVGKSERRHLKITFDCGKYK
FPALFWGEGERLGRDFNKGDVLDVLYSMNRNTFNGAVTPQMIITDFVRSGGHGHV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagaatggcgtaaaaaagaggtatcgagggaagcggtaaaagcgctgtgcgatctg
tacggcgtcgatgcgctcaccgcttcgattatggtgcggcgcggcattacgcaggcgaac
gacgtactgtattttaaagaaagcgatctgcgctttttgcacaacccttttttgttttca
aatatggaagacgcggtcgaccgtattacgagtgcaaaagaagaaggcgaaaagatattg
attttcggcgaccgcgatgtcgacggcgtaagcgcgacggccatcctctacacgtattta
caaaagagcggctatgacgtttcgtggcggcttcccgtcggagacgacgcttacggtctt
tcgatgcaggcggtcgacgactttgcgaaagactacggttcgctcatcataacggtcgac
tgcggtatttcaaacgcggccgaaatcgcgcacgcgagagaactcggtatcgacgtcatc
gtcaccgatcaccacaatccgcccgaaacgcttcccgatgcctgtgcgattctcgatccg
aaagtaaaagattcgggctatccctttgccgatatttcgggcgcggcggtttcgtacaag
ctcgtcgaagcgctccgcttcagcgaatcggaattgtacaaagcggaaatcgcgcttttg
aatgtgaggcctgcagaaacggaaggcgtatacatcgactgcgtaaaagtgcgaaacctc
gtccgcacggcatccctttcggagcacataaggggcgggggcatatcgatagcgcaaacg
aaacttcccgaatttttgaaaggtgcgcagatatttacgtggaacgaagaagcggtcaaa
aagcagctatcggacatattcggacgcggtgtcgaattcaatacggcagacctccgtccg
gaagtttcaaagctcatcccctctctttcgcgcatgagtctccttgcagcgaaagacgct
tcgcgcatcgcaaaatacagcgcgcatccgataagcgaaatcgacggcttttacaatata
ttcgtaagctttgccgaaaaaaaaatcgaaacgaagcaaatacttgccgaccggcaaaac
gatctcgaactcgtcgccgtcgccgctatcgccgatattatgccgctgaaagacgaaaac
agaatcctcgtcaaagcgggactggacgcgataaacgaaggaaaggtgcggccgggtctt
gtcgaattgttttcgcgtctttccgtcgcgggaaaaaagataagctcttccgatctgtcg
tggacggtcatccccgctctcaacgccgcaggccgcatgggcgagtcgaatgccgccctc
gaaatgctcatctcgcccgatgccgacgtgcgtgaaaaaagagccgaagagatcatcgct
ctcaacgaaaagagaaaagcctttgtcggagatgcggcgagcgttacggcaatccaagcg
gaagagagcttcgagcgctgcggaaaaaaactctgcgtcgtcgtcgacgagcggataaat
aagggcgttacgggtatcctcgcttcgcgcctcatggcaaaatacaaaacgcctgcgatc
gtcatcacctttatcgacggagacgttgccgtaggctccatgcgaagctgccgcggcctc
aatgcgacggacttcctcgcctctctcggcgatatctttataagctacggcgggcataac
tgcgcggcgggcttttcgtttccgaaagaaaaacttccgctctttaccgaaaggctcaaa
actgcagccttgcacattgtcctcgatccggaatcggataccctcgacgtggatgcggaa
cttcccgcgccctacctttcgcccgcaatcctctcggttgtcgatgcgttcgaacccttc
ggtgagggcaatcgcgaaatcgtctttttgtcgaaagcgcttcccgtaaccgatgcgacc
ctcgtcggcaaaagcgaacggcggcacttgaaaatcacgttcgactgcggaaaatataaa
ttccccgcgctcttttggggcgaaggagagcggctcgggcgcgacttcaacaagggcgat
gtactcgacgttttgtattcgatgaacagaaatacgttcaacggcgcggtaacgccgcaa
atgataatcaccgatttcgttcggtcgggaggacacggacatgtataa
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