Treponema socranskii subsp. buccale: HRI97_09035
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Entry
HRI97_09035 CDS
T08383
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsk
Treponema socranskii subsp. buccale
Pathway
tsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRI97_09035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsk03019
]
HRI97_09035
03009 Ribosome biogenesis [BR:
tsk03009
]
HRI97_09035
Enzymes [BR:
tsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRI97_09035
Messenger RNA biogenesis [BR:
tsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRI97_09035
Ribosome biogenesis [BR:
tsk03009
]
Prokaryotic type
rRNA helicases
HRI97_09035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UTD03191
LinkDB
All DBs
Position
complement(1982320..1984401)
Genome browser
AA seq
693 aa
AA seq
DB search
MDSEDISFEDLGLDEQTLAAVARKGFVTPSPIQVLAIPRLLDGDANVIARARTGTGKTAA
FGLPLVQRLRGGSDHVKALILEPTRELAVQTCTEMQSFADGKFPRTCVVYGGASMLSQIR
DLKRGVEIVVGTPGRIQDHIERGTLDIGKIDYFILDEGDEMLDMGFIEDIEAIFEKANPA
SRILLFSATMPAPILKIASQFMGEYEIVEEEGVVDEPLLIEQKFWVLRESEKIDALVRLI
DIADDFYGLVFTQTKMDADTVARQLDERGYEVAALHGDVAQSQREKILARFRRKKTRILV
ATDVAARGIDITGLSHVVNYSLPFDGATYVHRIGRTGRAGAAGTAITFVRPEERKRKLSY
MQNAIRKSTKGELKEEAVPTIEEVVAKKRERLFDKLKSDIGLSSRHDRVSEKSDADKLII
NNSDAQTDISASNDESDMYGVPDAEGQNDVSVEAAASDANAKDDTEVQSDADMRGDTNLQ
KPALIKADAQFAEMAKELCKDNDAEDVLAAVMSVLYGTSLDVSRYGKIARQKGEAGRNRV
SFGGAGDQVRLYVQMGRRDGYGPREIADYFSDLLHIPGRFVDRIDMAANFTLLSLPADSA
KKALELSKRGGDVPHIHVDSKSGGFEKKSRSSFRGDGESFGGKKKAGRFERSAGGFNEKK
FRAHGRPNVHTPTERSGSAGLYRRKSSGRAERF
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggattcagaagacatctctttcgaagacctcggtctggacgaacagaccctggccgca
gtagcccgtaaaggctttgtcactccttctccgattcaagttctcgcaattccgcgcctt
ttggacggagacgcaaatgtcatcgcgcgcgcgcgtacgggaacgggaaaaactgccgca
ttcggtttgccgctcgtgcagcgcttgagaggcggaagcgatcacgtcaaagcgctcatc
cttgagccgacgcgggaacttgccgttcagacgtgcaccgaaatgcagtccttcgccgac
ggaaaatttccgcgcacctgcgtcgtttacggcggcgcgtcgatgctgtctcagatacgc
gatttgaaacgcggcgttgaaatcgtcgtcggcactcccggccgcattcaggatcacatc
gaacgcggtacgctcgacatcggcaaaatcgattatttcatcctcgatgaaggcgatgaa
atgctcgatatgggttttatcgaagatatcgaagcgattttcgaaaaagccaatcccgca
agccgcatcctgcttttcagcgcgacgatgcctgctccgattctcaaaatcgcttctcag
tttatgggcgaatacgaaatcgtcgaagaagaaggcgtcgtcgacgagccgctgctcatc
gaacagaaattttgggtgctccgcgaaagcgaaaagatagacgccctcgtgcgcctcatc
gatattgccgacgatttttacggtctcgtctttacgcagacgaagatggacgccgacacc
gtcgcgcgccagctcgacgaacgcggctatgaagtcgcagctcttcacggagatgttgcg
cagagccagcgcgaaaaaatcctcgcgagattccgccgaaaaaaaacgcgcatcctcgtt
gcgaccgacgtcgccgcccgcggcatcgatatcacaggtctcagccacgtcgtcaattat
tcccttccgttcgacggtgcgacgtacgtgcatcgtatcggacgcacgggcagggcggga
gctgcgggaacggcgatcacctttgttcgtcccgaagagcggaagcgcaaactcagctat
atgcaaaatgcgatccgaaaaagcacgaagggagagcttaaagaagaagccgttccgacg
atcgaagaagtcgtcgcaaaaaaacgggagcggcttttcgacaaacttaaaagcgatatc
ggcttgtcttcgcggcacgatcgcgtttcggaaaaaagcgatgccgataaattaataatt
aataattccgatgcacagacggatatctccgcttcgaatgacgaaagcgatatgtacggt
gtgcccgatgcggaggggcaaaacgatgtgtccgttgaggctgcggcatccgacgcgaac
gcaaaggacgatacggaagtacagagcgatgcggatatgcggggtgatacgaatcttcaa
aagcccgcgctcatcaaagccgatgctcagtttgcggaaatggcgaaagagctgtgcaaa
gacaacgatgccgaagacgtgctcgcggctgttatgtccgtactctacggcacatcgctc
gatgtttcccgttacggaaagattgcacgtcaaaaaggcgaagcgggtcgaaaccgcgtt
tcgttcggaggggcgggcgatcaagtgcgcctctacgtacagatgggacggcgcgacgga
tacgggcctcgcgaaattgcggattatttcagcgatctccttcatattccggggcgcttt
gtcgaccgcatcgatatggccgcgaattttacgcttttgagtcttcccgccgattcggca
aaaaaagcgctcgaactgtccaaaagaggcggcgatgttccgcacatccacgtcgattcg
aagtccggcggctttgaaaaaaaatcacgttcatcgtttcgaggcgacggcgaatccttc
ggcggaaaaaagaaagcgggacgttttgaaaggagtgcgggcggcttcaacgaaaaaaaa
ttcagagcgcacggtaggccgaacgtacatacgccgacggagcggagcggaagcgcgggc
ctgtatcggcgtaaatcctccggaagagccgaacgcttttag
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