Thermococcus siculi: A3L11_04540
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Entry
A3L11_04540 CDS
T05103
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
tsl
Thermococcus siculi
Pathway
tsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L11_04540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsl03019
]
A3L11_04540
Messenger RNA biogenesis [BR:
tsl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L11_04540
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
A3L11_04540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
KH_1
ECR1_N
KH_2
RRP40_S1
KH_KhpA-B
KH_KRR1_2nd
Motif
Other DBs
NCBI-ProteinID:
ASJ08539
UniProt:
A0A2Z2MJG5
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All DBs
Position
856709..857479
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AA seq
256 aa
AA seq
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MRRIFVKSRELVVPGTLLAQGPFKYGRGTFREGNRIYSTVVGLVEIRGDAIRVIPLEGPY
MPEVGDNVLGKIVDVRFSAWAVDIGAPYEASLRVQDATEERIDLMKTDLRKIFDIGDIIY
ARIKGYNEINQIDLTTKGMPFRGGPLRGGQLVTITPSKVPRLIGKGGSMINLIKKLTNTR
IIVGQNGWVWVSGKNEELEKLAIEAILKVNRESHTQGLTDRIKELLTTRLQELKEQGVIE
EIPQIEEPKNGEGEGE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgagaaggattttcgtaaagagtagggaactggttgtccctgggactttactcgcccag
gggccgtttaagtacggaagagggaccttcagggaaggcaacaggatatactcgaccgtc
gtggggctggttgagataaggggcgacgccataagggtgatcccgctcgaaggcccctac
atgccggaggtcggagacaacgtcctcggaaagatagtcgacgttaggttctccgcttgg
gccgttgacataggcgccccatacgaggccagcctgcgcgttcaggacgccacggaggag
cgcatcgacctcatgaagaccgacctgaggaagatattcgacataggcgacataatatac
gccaggataaagggctacaacgagataaaccagatagacctcaccacgaagggcatgccc
ttcaggggcggcccgctcaggggagggcagctggtgacgataacgccctccaaggtgccc
aggctcataggcaagggcggctccatgatcaacctcatcaaaaagctgaccaacacgagg
ataatagtcggccagaacggctgggtatgggtcagcggtaagaacgaggagctggagaag
ctggctattgaggcgatactcaaggtgaacagggagagccacacccagggactcaccgac
aggatcaaggaactcctcaccaccaggctccaggagctaaaggagcagggtgttattgag
gagataccccagattgaggaacccaagaacggagagggtgaaggagaatga
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