KEGG   Thermococcus siculi: A3L11_04540
Entry
A3L11_04540       CDS       T05103                                 
Name
(GenBank) RNA-binding protein
  KO
K03679  exosome complex component RRP4
Organism
tsl  Thermococcus siculi
Pathway
tsl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tsl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L11_04540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsl03019]
    A3L11_04540
Messenger RNA biogenesis [BR:tsl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L11_04540
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     A3L11_04540
SSDB
Motif
Pfam: ECR1_N_2 KH_6 RRP4_S1 KH_1 ECR1_N KH_2 RRP40_S1 KH_KhpA-B KH_KRR1_2nd
Other DBs
NCBI-ProteinID: ASJ08539
UniProt: A0A2Z2MJG5
LinkDB
Position
856709..857479
AA seq 256 aa
MRRIFVKSRELVVPGTLLAQGPFKYGRGTFREGNRIYSTVVGLVEIRGDAIRVIPLEGPY
MPEVGDNVLGKIVDVRFSAWAVDIGAPYEASLRVQDATEERIDLMKTDLRKIFDIGDIIY
ARIKGYNEINQIDLTTKGMPFRGGPLRGGQLVTITPSKVPRLIGKGGSMINLIKKLTNTR
IIVGQNGWVWVSGKNEELEKLAIEAILKVNRESHTQGLTDRIKELLTTRLQELKEQGVIE
EIPQIEEPKNGEGEGE
NT seq 771 nt   +upstreamnt  +downstreamnt
atgagaaggattttcgtaaagagtagggaactggttgtccctgggactttactcgcccag
gggccgtttaagtacggaagagggaccttcagggaaggcaacaggatatactcgaccgtc
gtggggctggttgagataaggggcgacgccataagggtgatcccgctcgaaggcccctac
atgccggaggtcggagacaacgtcctcggaaagatagtcgacgttaggttctccgcttgg
gccgttgacataggcgccccatacgaggccagcctgcgcgttcaggacgccacggaggag
cgcatcgacctcatgaagaccgacctgaggaagatattcgacataggcgacataatatac
gccaggataaagggctacaacgagataaaccagatagacctcaccacgaagggcatgccc
ttcaggggcggcccgctcaggggagggcagctggtgacgataacgccctccaaggtgccc
aggctcataggcaagggcggctccatgatcaacctcatcaaaaagctgaccaacacgagg
ataatagtcggccagaacggctgggtatgggtcagcggtaagaacgaggagctggagaag
ctggctattgaggcgatactcaaggtgaacagggagagccacacccagggactcaccgac
aggatcaaggaactcctcaccaccaggctccaggagctaaaggagcagggtgttattgag
gagataccccagattgaggaacccaagaacggagagggtgaaggagaatga

DBGET integrated database retrieval system