Thermococcus siculi: A3L11_08380
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Entry
A3L11_08380 CDS
T05103
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tsl
Thermococcus siculi
Brite
KEGG Orthology (KO) [BR:
tsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsl03016
]
A3L11_08380
Enzymes [BR:
tsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A3L11_08380
Transfer RNA biogenesis [BR:
tsl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A3L11_08380
Prokaryotic type
tRNA splicing ligases
A3L11_08380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
TOM5_2
Motif
Other DBs
NCBI-ProteinID:
ASJ09242
UniProt:
A0A2Z2MLJ4
LinkDB
All DBs
Position
complement(1556427..1559309)
Genome browser
AA seq
960 aa
AA seq
DB search
MVPLKRIDKIRWEIPKFDRRMRVPGRVYADDALIEKMRNDRTLEQASNVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDAREGVISPGGVGYDINCLAPGTKVLTEHGYWLKIEEMPQK
FKLQGLRVYNTDEGHNDFSRVAFVAEREVEEGEKAVRIITENGTVIEGSEDHPVLTPEGY
VYLGNIREGDYILVYPFDGVPYEERKSLLLDESAFEDEDPQVIKFLRERKLIPLRWDDPK
IGKLARILGFALGDGHLGEMSGRLTLSFYGKEETLRELKKDLEMLGISANLYVRERDYTI
ETVSGQYSGKSLSAELRVASRSFALLLEKLGMPRGDKTKKSYRAPEWIMEAPLWVKRNFL
AGLFAADGSIVEFKGVTPLPINLTQSRAEELGESLLEFMSDVARLLEEFGIKSTVYKVKS
KKGVTYRLALVGEESIRNFLGKVNYEYDLEKKAKGLIAYAYLKFKEHVKEERKRAMETAR
RVYEETGSVGLAYLKVKDTVNRRFVERTIYEGNREPRVPKDFPTFEEFAGERGYEGGFVA
ERVVKVDHVKPEYDRFYDIGVYHEAHNFIANGVVVHNCGVRLIRTNLTEKEVRPKIKELV
DTLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGANP
GAVSQKAKQRGAPQLGSLGSGNHFLEIQVVDKIFDEKIAKAYGLFEGQVVVMVHTGSRGL
GHQVASDYLRIMEKANRKYGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMIT
HWVRESFEEVFKRKAEDMEMEIVYDVAHNIAKLEEHEVDGKRVKVVVHRKGATRAFPAGH
PDVPRAYRDVGQPVLIPGSMGTASYVLAGAEGSMRETFGSTCHGAGRLLSRKAATRQYRG
DRLRNELAQRGIYVRAASLRVVAEEAPGAYKSVDNVVNVVHQAGIANLVARMRPMGVAKG
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggtcccgcttaagaggatagacaagatccgctgggagataccgaagttcgacaggcgg
atgcgcgtccctggaagggtctacgccgacgatgctctaatcgagaagatgagaaacgac
aggacgctggagcaggcctccaacgttgccatgcttccgggcatctacaagtactccatc
gtaatgccggacggacaccaggggtacggcttcccaatcggtggagtggccgcctttgac
gcaagggagggcgtaataagccccggaggtgtgggctatgatatcaactgccttgctccg
ggcactaaagtcctcacggagcatggatactggctgaaaatcgaagaaatgcctcagaag
ttcaagcttcaggggctgagggtttacaacacggatgaggggcacaacgacttctcaagg
gtcgccttcgtggccgagagggaggttgaggaaggtgaaaaggccgtcaggataatcacc
gagaacggcacagtcatagagggaagcgaggaccatccagttttgactccggagggttat
gtttaccttgggaacatcagggaaggcgattacatcttggtatacccatttgacggcgtc
ccctacgaggaaagaaagagccttctcctagatgagagcgcctttgaagacgaggatccg
caggtgataaagttcctccgtgagaggaagctcattcccctccgctgggatgacccgaag
atcggaaagctggcgaggatactcggctttgccctgggagacgggcaccttggcgagatg
agcggaaggctcaccctgagcttctacggaaaagaagaaacgctgagggaactcaagaaa
gaccttgagatgctcggcatcagcgccaacctctacgtccgcgagagagactacactata
gagaccgtgagcggacaatacagtggcaaaagcctctcagcggaactcagggttgcttcc
agaagctttgcccttctacttgagaagcttggaatgccgcgcggagacaagaccaagaag
agctaccgcgccccggagtggataatggaggccccactctgggtcaagagaaacttcttg
gcaggactcttcgcggcggacggaagcatcgtggagttcaagggagtaaccccgctcccg
ataaacctgacccagtctagggcggaggaacttggagagagcctactggagtttatgagc
gatgtcgctaggctccttgaggagttcggaattaagagcacggtttacaaggttaagtca
aagaagggcgttacctaccgcctggcccttgtcggagaagagagcatcaggaacttccta
ggcaaggtcaactacgagtacgaccttgagaagaaggcgaagggactgatagcatatgcc
tacctgaagttcaaagaacacgtgaaggaagagagaaagcgggcgatggaaaccgccaga
agagtctatgaggagacgggaagtgtagggctcgcctacctcaaggttaaagataccgtc
aacaggcgcttcgttgagagaacgatttacgaggggaatagagagccgagggttccgaag
gacttcccgacctttgaggagttcgccggggagaggggctacgagggcggattcgtggct
gaaagggtcgttaaggtggaccacgttaagccagaatacgacaggttctacgacatcggt
gtctatcacgaggcccacaacttcatagccaacggtgtcgtcgtccacaactgcggcgtc
aggctcatcaggaccaacctcaccgaaaaggaagtgaggccgaagataaaggagctggtt
gacacgctcttcaagaacgttccctcgggcctggggagcaagggaagagtgaggctccac
tggacccagctcgatgacgttctcgccgacggtgccaagtgggccgttgacaacggctac
ggctggaaggaggatctggagcaccttgaggaaggcggaaggatggagggagcaaatccg
ggagcggtaagccagaaggcgaagcagaggggggcgccacagctcggctccctcggttct
ggaaaccacttccttgagattcaggtggtcgataagatcttcgacgagaaaatcgcgaag
gcctacggcctcttcgaggggcaggtagttgtgatggtccacacaggttctcgcggcctt
ggccaccaggtggcgagcgactacctcaggataatggagaaagccaacaggaagtacgga
atcccctggccggacagagaactcgtcagcgttccgttccagagtgaggaagggcagagg
tactttagcgctatgaaggccgccgccaacttcgcctgggccaacaggcagatgataacc
cactgggtcagggagagcttcgaggaggtcttcaagaggaaggccgaggacatggagatg
gagatcgtctacgacgtcgcccacaacatagcgaagcttgaggagcacgaggtggacgga
aagagggtcaaggtcgttgttcacaggaagggagcgacgagggcgtttccagcgggccac
ccggacgttcctagggcttaccgcgacgtcggccagcccgtcctgataccaggttcaatg
ggtaccgcaagctacgtcctcgctggagccgaaggctcaatgagggaaaccttcggttcg
acctgccacggcgctggaagactgctcagcaggaaggccgcaaccaggcagtaccgcggt
gacaggttgaggaacgagctggcccagaggggcatctacgttagggccgcttccctccgc
gttgttgccgaggaggcacctggtgcctacaagagcgtggacaacgttgtcaacgtcgtt
catcaggccggcatagcgaacctcgtggcaagaatgaggccgatgggcgttgcgaagggc
tga
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