Thermococcus siculi: A3L11_10055
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Entry
A3L11_10055 CDS
T05103
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsl
Thermococcus siculi
Pathway
tsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L11_10055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsl03019
]
A3L11_10055
03009 Ribosome biogenesis [BR:
tsl03009
]
A3L11_10055
Enzymes [BR:
tsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3L11_10055
Messenger RNA biogenesis [BR:
tsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3L11_10055
Ribosome biogenesis [BR:
tsl03009
]
Prokaryotic type
rRNA helicases
A3L11_10055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASJ09554
UniProt:
A0A2Z2MS16
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All DBs
Position
1894661..1895848
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AA seq
395 aa
AA seq
DB search
MDIIGQSQTGTGKTAAFALPIIEVIDPKERGVQAIILTPTRELALQVADEIKSLRGKKRI
YVYAVYGGQPIGPQIRALERGTHIVVGTPGRVLDHIRRGTIDLSGVKFFILDEADRMLDM
GFIDDIEAIFRETPKEKRVLMFSATMPPEIKRLARRYMKNHEVISVSSDELVPEMVDQEY
VEVVPARKLTVLRKILDSGEFYGIVFCATKRETRELSEKLRRSGYRAEALNGDMSQAARE
RTFWRFKTKKTRILVATDVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKRGKA
VTFIMPGEFRRLRYIAQVAGVEVRKSELSEEIPREYRERYERNQRDYGSRNYSRNSGRSR
NYGRSRGNGNNGRNRKGGRRNYSDDYSGDYRNHRY
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
gtggatataatcggccagtcccagactggaactggaaagacagcagcttttgcgcttccg
ataatagaggtaatagaccccaaggagaggggcgtccaggcgataatcctcacgcccacc
agggagcttgccctgcaggtggcggacgaaattaaaagcctccgcgggaagaagaggatc
tacgtttacgctgtctacggcggccagccgataggcccccagataagggcacttgagagg
ggaacgcatatagtagtgggaacccctggaagggttctcgaccacataaggcgtggcacc
attgacctcagcggagttaagtttttcatcctcgacgaggccgacaggatgctcgacatg
ggcttcatcgacgacattgaagcgatctttagggagacgccgaaggaaaagagggttctg
atgttctcggcaaccatgcctccggaaattaagaggctcgcgaggcgatacatgaagaac
cacgaggtcataagcgtcagcagcgacgagctggtgccggagatggtcgaccaggagtac
gtcgaggtcgtccccgccaggaagctcaccgttctcaggaagatactggacagcggagag
ttctacggcatagtcttttgcgccaccaagagggagacgagagaactcagcgagaagctc
aggagaagcggctaccgggccgaggctctaaacggtgacatgagccaagcggcgagggag
aggaccttctggcgcttcaagacgaagaagacgaggattctcgttgccactgacgttgcc
gcaaggggtcttgatgttcaagacataagccacatcgtgaactactcgctgcccatgacg
gccgaggactacgtccacaggataggcaggaccggcaggatgggcaagagggggaaggca
gtcaccttcataatgcccggcgagttcaggaggctgcgctacatagcccaggttgccggc
gtggaagtcagaaagtcagagctgagtgaggaaattccgcgtgagtaccgcgagaggtac
gagaggaaccagagggattacggctcaaggaactattccagaaactccgggcgctccagg
aattacggcaggagcagagggaatggaaacaacggcaggaacaggaaaggcggaaggaga
aactactcggacgattattcaggcgattacaggaaccatagatactga
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