Tsukamurella tyrosinosolvens: ASU32_06960
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Entry
ASU32_06960 CDS
T05267
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tsm
Tsukamurella tyrosinosolvens
Pathway
tsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASU32_06960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsm03021
]
ASU32_06960
03019 Messenger RNA biogenesis [BR:
tsm03019
]
ASU32_06960
Transcription machinery [BR:
tsm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ASU32_06960
Messenger RNA biogenesis [BR:
tsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ASU32_06960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
AAA_22
DUF7084
TFIIA
Motif
Other DBs
NCBI-ProteinID:
AUN39790
LinkDB
All DBs
Position
1398987..1400993
Genome browser
AA seq
668 aa
AA seq
DB search
MTETDVTTSPETATATVSTTRADERRRSGLNGMVLAELRGIASELGIKGVSGLRKGDLIA
AINDHGGAGAKAAPKAAKADAPKSEAPKADAPKGDAPKSEAPKGDAPTSEAPKRDAPTSD
APKADAPAAEAEAPKTEGRQARAPRGERAAKADRAPSDNSDASAQADAPQGDAPKTEGDQ
GQQQGQRRERNQRRNQNQDGENRQQGENRQQGDRQRNQGNNQGGQGQGNRNQNNGPDDDG
EGTGRRGRRFRERRRGRDRGQNDSEPQVSEDDVLQPVAGILDVLDNYAFVRTSGYIAGPN
DVYVSMNMIRRNGLRRGDAITGAVKMPRDGEGNNDGGGNQGGGGGRGNQNNRQKFNPLVR
LDSVNGQDVDSAKNRPEFNKLTPLYPNQRLRLETAQNILTTRVIDLIMPIGKGQRALISA
PPKAGKTTVLQDIANAIATNNPECYLMVVLVDERPEEVTDMQRSVRGEVISSTFDRPPSD
HTSVAELAIERAKRLVEGGKDVVVLLDSITRLGRAYNNSSPASGRILSGGIDSTALYPPK
RFLGAARNIENGGSLTIIATALVETGSTGDTVIFEEFKGTGNAELKLDRKISERRVFPAV
DVAASNTRKDELIMAPDEAAVVNKLRRLLAALDSQQAIDLLISQLKKTQNNIEFLMTVQK
NSGFGDND
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaacggacgtgaccaccagcccggagacggccaccgccacggtcagcaccacg
cgggccgacgagcggcgtcgctcgggcctcaacggcatggtgctggccgagctgcgagga
atcgcgagcgagctggggatcaagggcgtctccggcctccgcaagggcgatctcatcgcc
gcgatcaacgaccacggcggcgccggcgccaaggccgcgcccaaggcggccaaggccgac
gcgccgaagagcgaggccccgaaggccgacgctcccaagggcgacgctccgaagagcgag
gcgcccaagggcgacgcccccacgagcgaggcgcccaagcgcgacgcccccacgagcgac
gcgcccaaggccgacgcccccgcggccgaggccgaagcgcccaagaccgagggccgccag
gcccgcgcgcctcggggcgagagggccgccaaggcggaccgcgcaccgtcggacaacagc
gacgcgagcgcccaggccgacgcgccccagggcgacgccccgaagaccgagggcgaccag
ggccagcagcagggccagcgccgcgagcgcaaccagcgccgcaaccagaaccaggacggc
gagaaccgccagcagggcgagaaccgtcagcagggcgaccgccagcggaatcagggcaac
aaccagggcggccagggccagggcaaccggaaccagaacaacggcccggacgacgacggt
gagggcacggggcgccgcgggcgtcgcttccgcgagcgccgccgcggccgcgaccgcggc
cagaacgacagcgagccgcaggtcagcgaggacgacgtcctgcagcccgtggccggcatc
ctcgacgtgctcgacaactacgctttcgtgcgcacctccggctacatcgccgggccgaac
gacgtctacgtgtcgatgaacatgatccgccgcaacggcctgcgccgcggcgacgcgatc
accggcgccgtgaagatgcctcgcgacggcgagggcaacaacgacggcggcggcaaccag
ggcggcgggggcggccgcggcaaccagaacaaccggcagaagttcaacccgctggtgcgg
ctggactcggtcaacggccaggacgtcgattcggcgaagaaccggcccgagttcaacaag
ctcacgccgctctaccccaaccagcggctgcgcctcgagaccgcgcagaacatcctcacc
acccgcgtgatcgacctgatcatgcccatcggcaagggccagcgcgcgctgatctccgcc
ccgccgaaggccggtaagaccacggtgctgcaggacatcgccaacgcgatcgccaccaac
aaccccgagtgctacctcatggtcgtgctggtggacgagcggcccgaagaggtcaccgac
atgcagcgcagcgtgcgcggcgaggtcatcagctccaccttcgaccggcccccgtcagac
cacacgtccgtcgccgagctggccatcgagcgggccaagcgcctcgtcgagggcggcaag
gacgtcgtggtgctgctcgactcgatcacccgcctgggccgcgcctacaacaactcgagc
cccgcgtcgggccgcatcctctccggcggtatcgattcgacggccctgtacccgccgaag
cggttcctcggcgctgcgcgcaacatcgagaacggcggctcgctgacgatcatcgccacg
gcgctggtcgagaccggctccaccggtgacaccgtgatcttcgaggagttcaagggcacc
ggcaacgccgagctcaagctggaccgcaagatctccgagcggcgcgtcttcccggcggtc
gacgtcgcggcgtcgaacacccgtaaggacgagctcatcatggcccccgacgaggcggcc
gtggtgaacaagctgcgccggctgctggccgcgctggacagccagcaggccatcgacctg
ctgatcagccagctcaagaagacgcagaacaacatcgagttcctcatgaccgtgcagaag
aacagcggtttcggcgacaacgactga
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integrated database retrieval system
