KEGG   Tsukamurella tyrosinosolvens: ASU32_16820
Entry
ASU32_16820       CDS       T05267                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K03090  RNA polymerase sigma-B factor
Organism
tsm  Tsukamurella tyrosinosolvens
Brite
KEGG Orthology (KO) [BR:tsm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsm03021]
    ASU32_16820
Transcription machinery [BR:tsm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ASU32_16820
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r3 Sigma70_r2 Sigma70_r4_2 HTH_23 HTH_10 HTH_24 HTH_3 HTH_Crp_2 KORA Sigma70_ECF GntR DUF7343 HTH_Tnp_ISL3 MarR HNH_repeat MarR_2 DUF134 HTH_28 GerE HTH_AraC HTH_31 HTH_5
Other DBs
NCBI-ProteinID: AUN41466
LinkDB
Position
complement(3451403..3452176)
AA seq 257 aa
MPPQPREPRHSSEDYSDVAEILRSARRQGGARAAARDDVINRCLPLAENLARRFAGRGEP
HDDLVQVARVGLVNAVDRFDPDKGADFLSFAVPTMLGGLRRHFRDTGWATRVPRRMQELH
LRMNSAIAETAQELGRTPTYRELAERLEVSVDDVREAARAGNGYRARSIDQPVGDDERST
PVDRIGETDPGFELVEEFASLRPAVERLDERERTVLALRFYRSMTQTEIAAELGISQMHV
SRILSRALGRLRSHVAE
NT seq 774 nt   +upstreamnt  +downstreamnt
gtgccgccgcaacctcgggagccgcggcactcgagcgaggactactccgacgtggcggag
atcctccgatccgcgcgtcgtcagggcggggcgcgcgccgccgccagggacgacgtgatc
aaccggtgcctgcccctcgcggagaacctggcgcggaggttcgccggccgaggtgaaccc
cacgacgacctggtgcaggtcgcgcgcgtcggtctggtcaatgcggtggaccgcttcgat
ccggataagggcgccgatttcttgtctttcgcggtgcccaccatgttgggcggccttcgg
cgccacttccgcgacaccggctgggcgacccgcgtgccgcggcgcatgcaggagttgcac
ctgcgcatgaactccgcgatcgccgagacggcgcaggagctcgggcggacaccgacctac
cgcgagctcgcggagcgcctggaagtgagtgtggatgacgtccgagaggcggcacgcgcg
gggaacggctaccgagcgcggtcgatcgaccagcccgtcggtgacgacgagcggtccaca
ccggtggacaggatcggggagacggacccggggttcgagctcgtcgaggagttcgcgtct
ctgcgccccgcggtcgagcggctcgatgaacgtgagcgtaccgttctcgcgctgcggttc
taccggtcgatgacgcagaccgagatcgcggcagagctgggcatctcgcagatgcacgta
tcgaggatcctgtccagggcgctcggcaggctccggtcgcatgtcgccgagtag

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