Candidatus Pseudothioglobus singularis: W908_05875
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Entry
W908_05875 CDS
T04071
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tsn
Candidatus Pseudothioglobus singularis
Pathway
tsn03410
Base excision repair
tsn03430
Mismatch repair
tsn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
W908_05875
03430 Mismatch repair
W908_05875
03440 Homologous recombination
W908_05875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsn03400
]
W908_05875
DNA repair and recombination proteins [BR:
tsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
W908_05875
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
W908_05875
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
W908_05875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ALE02104
UniProt:
A0A0M4M338
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All DBs
Position
complement(1145686..1147380)
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AA seq
564 aa
AA seq
DB search
MLTREIDQSLYESYSDDIPLILKRIYAARGVSESQLSMALPGLLKPNFDQLNIALELLEK
CLLEDKQILIVGDFDADGATASAVAIKALRLMGAKHVDFLVPNRFKHGYGLSPEIVNEAK
RDKEPDLIITVDNGISSNEGAELARSLDIDVIITDHHLPPNELPNANAIINPNLRGCDFP
SKNLAGVGVCFYLFSSLKTYLTKQGYFEKNNIQNPDLRTLLDLVALGTVADVVKLDQNNR
ILVNEGIKRIREKRCSKGILAILELTKRPVESLQASDLGFTVAPRINAAGRLSDISQGIR
CLLSDDMNDARRYAQTLEEFNIKRRKEQTRMQDEALAIVEDQAIDKSDFAIVLYDESWHE
GVVGIVAGKLKETYQCPSAVFAKADNVLKGSIRSIPDVHIKDLLDLVDRENQGLIEKFGG
HAMAAGLTINPDNFEQFKNAFTEEITKHLKGKKPIIELLTDGSLDSAEITLKNAELLRQA
SPWGQGFEEPIFYGDFELVEQRIVGEKHLKCNLKLQGTNSVLEGIAFFQEKLDSKKARVA
YKLNVNSFRGNESLQLMIESIESS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
gtgctgactagagagattgatcaatccttgtatgagtcatattctgacgatataccctta
attctcaaaagaatctatgcagccagaggcgtctctgagtcgcagctctcaatggcgctt
cctggtcttcttaagcccaactttgaccaactcaatatcgccctagagcttcttgagaaa
tgcctcttagaggataagcagatcctgattgttggagattttgatgcggacggtgcaact
gccagtgcagtggctattaaggcgctaagactcatgggtgcaaaacatgtcgatttttta
gttccaaatcgttttaagcatggctatggtctcagtcctgagatcgttaatgaggcaaag
cgtgataaagagccagatctcattattacggtcgataatggcatatcaagtaatgagggt
gcagaacttgcaagatcccttgatattgacgtcattatcacagatcatcaccttccgcct
aatgagcttcccaatgccaatgcgattattaatcccaatttaaggggttgtgattttcca
tcaaaaaatttggctggggttggggtctgtttttatttgttttcatcacttaaaacctat
ctcacaaaacaaggttattttgaaaagaataatattcaaaatccagaccttcgaacgctt
cttgatttagttgcacttggaaccgttgcagatgttgtaaaactggatcaaaacaatcga
attctagtgaatgaaggaatcaagcgtattcgtgaaaaacggtgctcaaaaggcatcctt
gccatccttgagttaacaaaaaggccagttgagtcgcttcaagcatctgaccttggattt
acagtcgcaccaagaatcaatgcggcaggaagactcagtgatatttctcaggggattcgc
tgcctcttatcagatgatatgaatgatgcgagaaggtatgcgcaaacgcttgaagagttt
aatattaaaaggcgcaaagagcagactcgtatgcaggacgaggctctagctattgttgaa
gatcaagctatcgataagagtgattttgcaatcgttctctatgacgagtcttggcacgag
ggagtggtcggtattgttgctggaaaactcaaagaaacctatcagtgcccatctgcagtg
tttgccaaggcagataacgttttaaagggctctatacgctctattccagatgtccacatc
aaagacttgctagaccttgttgatagagaaaatcaaggactcattgagaagtttggtggc
catgcgatggcggcaggtttgaccatcaatccagataactttgagcagttcaaaaatgca
tttactgaggaaataacaaagcatctcaaaggtaaaaaaccaattatcgagcttctaacc
gatggaagtcttgattcagctgaaataacccttaaaaatgcagagctgttgaggcaagct
tcaccctggggtcagggttttgaagagcccattttttatggtgactttgagctagttgaa
cagagaattgtgggtgaaaaacatctcaagtgtaatttaaaactccaaggtacaaattca
gttttagagggaatcgctttttttcaggaaaagcttgattccaagaaggctagggtggct
tataagctcaatgtcaattcatttagagggaatgagtctttgcagcttatgattgagtca
attgaaagctcttaa
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