Candidatus Pseudothioglobus singularis: W908_06220
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Entry
W908_06220 CDS
T04071
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tsn
Candidatus Pseudothioglobus singularis
Brite
KEGG Orthology (KO) [BR:
tsn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsn03016
]
W908_06220
Enzymes [BR:
tsn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
W908_06220
Transfer RNA biogenesis [BR:
tsn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
W908_06220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ALE02164
UniProt:
A0A0M4LH98
LinkDB
All DBs
Position
1209855..1210934
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AA seq
359 aa
AA seq
DB search
MKYYYHKLLIKYNNSIKVIILIKNNEQLEKYLNGINEESILGIDTEFRRIDSYSPELCLV
QIASKSHLECIDILSISNLEPLFNKLYDGKTLWVIHSARQDIEALYYLSGRTPSHLFDTQ
IGASFLNYPIQVSYQAITEKLQNIFLEKKFTRFDWRKRPLPNDVLKYALDDVKYLLPNYR
ILKKELVNQGKLSWAEEEVQFLLNKDTYEPNYRQILKKTKGINKISHKNQENAFKLIHWR
ESIAQQKNKPRKWIMSDESLIDYANGQRKLSDSKNKLFENFIRKSKLIAGPEDSLVAKKP
LSESETLLKNQLKDKINLLSTKYAIPSELICSSKNLVKLIKGDNTLSIQSGWRSELFKL
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgaaatattactatcacaagttgttgataaaatacaacaactcaattaaggtaattatt
ttgataaaaaacaacgaacaactagaaaaatatttaaatggtatcaatgaggaatctatt
cttggtatagacactgagtttaggaggattgactcctattcgcctgaattgtgtttagtt
cagattgcatcaaagagtcatctagagtgcatagatattctttcaataagtaatctagaa
cctttatttaataagctatatgatggcaaaacactatgggtcattcattctgcaaggcaa
gatattgaagcgctctactatttatcaggtcgtactccaagccatctcttcgatacacaa
attggcgcatcatttttaaattaccccatacaagtctcataccaggcaataacagaaaaa
cttcaaaatattttcttagaaaaaaaatttactcgttttgattggagaaaacgtccactt
cccaatgatgttttaaaatatgcactagacgatgttaagtacttattgccaaactataga
attcttaaaaaagagctagttaatcaaggaaagctgagttgggccgaggaagaagtccaa
tttttattgaataaagatacttacgagcctaactatagacaaattttaaaaaaaacaaag
ggcattaataaaatttcgcataaaaatcaagaaaatgcctttaagttaatccactggcgt
gaatcaattgcccagcaaaaaaataaacctcgtaaatggattatgtcagatgaatcatta
attgattatgctaatggtcaaaggaaactttcagacagcaaaaataaactttttgaaaat
tttataagaaaaagtaaattaatagctgggccagaagattcattagtagccaaaaaacct
ctttcagagagtgagacattgttgaaaaatcagcttaaggataaaatcaatctcttgtct
actaaatatgccattccttctgagcttatatgttcttcaaaaaatcttgtgaagctaata
aaaggagataatactttatcgattcagagtggatggcgctcagaattatttaaactttaa
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