Candidatus Pseudothioglobus singularis: W908_07390
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Entry
W908_07390 CDS
T04071
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsn
Candidatus Pseudothioglobus singularis
Pathway
tsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W908_07390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsn03019
]
W908_07390
03009 Ribosome biogenesis [BR:
tsn03009
]
W908_07390
Enzymes [BR:
tsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
W908_07390
Messenger RNA biogenesis [BR:
tsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
W908_07390
Ribosome biogenesis [BR:
tsn03009
]
Prokaryotic type
rRNA helicases
W908_07390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Utp25_C
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALE02357
UniProt:
A0A0M4LEA2
LinkDB
All DBs
Position
1444603..1446381
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AA seq
592 aa
AA seq
DB search
MSEHASSITFNSFGLSKEIIKVLDDVGYETPSAIQEQCIPHLLDGHDVIGQAQTGTGKTA
AFSLPLIDRIDISNNQVQLLVLAPTRELAIQVSEAIQTYSRHLKGFHVLPIYGGQSYDVQ
LRPLKRGVHAVVGTPGRVMDHLKRGTLKLNSLKALVLDEADEMLRMGFIDDVKWVMEKLP
KERQIALFSATMPDVIRRVAEKFLNNPKIVKVKTKTATAMTISQRYWLVGGVHKLDALTR
ILEVESFDALLIFVRTKTATVDLAEKLSARGFTAEAINGDIAQNQRERIIQQLKNGKIDI
LIATDVAARGLDVERISHVVNYDIPQDPESYVHRIGRTGRAGREGKAILFVAPRERRMLK
TIERITRQPIDPMMLPSAKIINEQRVINFKQRITNTLENQDLTIFEELVSSYQAEHEVDA
FKIASSLALMAQGTEPLLLNEKEINQPKFDSDNKNKISISIKADPLKDNPSIQMRRYRIS
VGRKDNIKPGNILGAIANEAEISSAFIGAIQIFQDFSTVDLPDEMPKETLAILKNTRVYD
KKLNIEELSEKNNSTAPRESKSHFKREHSKRKGNGKPRSNRDKKFSRSRSRK
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcatgcatcaagcattacatttaacagttttggcctatctaaagaaatcatt
aaagtacttgatgacgtaggatatgaaacaccctctgcaattcaagagcaatgcatacct
catcttcttgatggccatgatgtcattggtcaagctcaaactggaacaggtaagacagca
gccttttcccttcctctcattgacagaatagatataagcaataatcaagttcaacttttg
gttctagctcctactagggagctcgctattcaagtttctgaggcaatccaaacatactca
agacatcttaaaggttttcatgttctcccgatatatggtggacagtcatatgatgttcaa
ctaaggcccttaaaaagaggagtccatgcagtggtaggtactccaggcagagtcatggac
cacttaaaaagaggaacccttaagctaaattcactcaaggcactcgtcttagatgaggca
gatgaaatgttaagaatgggctttattgatgatgtcaaatgggtcatggaaaagctacct
aaagagcgccaaattgctcttttttcagcaacaatgccagatgttattagacgggttgct
gaaaaatttcttaacaatcctaaaatagtaaaagtaaaaacaaagactgctacagcaatg
acaattagccaaagatactggctggttggtggagttcataaacttgatgcgctaacgcga
attttagaagttgagtcatttgatgctcttcttatatttgttagaacaaaaactgcaact
gtagatttggcagaaaaattatcggctcgaggatttactgctgaagcaatcaatggtgat
attgctcagaaccaaagagagagaattattcagcaactcaaaaatggcaaaattgatata
ttaattgcaactgatgttgctgctagagggctagatgtagagagaatttctcatgtagta
aattatgatatacctcaagatcctgaatcatatgttcataggataggaagaactggaaga
gctggaagagaagggaaagcgattctttttgtagcaccacgtgagagaagaatgcttaag
acgattgaaagaattacacgtcagccgattgatcccatgatgctcccttcagcaaaaatt
ataaatgaacaaagagtcattaactttaaacaaagaattactaataccctggaaaaccaa
gatttaactatttttgaagaactcgtatcaagctatcaagcagagcatgaagttgacgca
tttaagattgcttcatctctagctctaatggcgcaaggcactgaaccgcttcttcttaat
gagaaagagattaatcaacctaaatttgactcagataataaaaataaaatttcaatttcg
attaaggctgaccctcttaaagataatccctctattcaaatgcgaagatatagaatatca
gttggacgaaaagacaacatcaaacctgggaatattctaggtgcaatagcaaatgaggca
gagattagtagcgcttttattggagctattcaaattttccaagatttctcaacggttgat
ttacctgatgagatgccaaaagaaacgcttgctattttgaaaaacacaagagtctatgat
aagaaactaaatatagaggagctttcagaaaaaaataacagtacagcacctcgtgaatca
aaaagtcatttcaaaagggagcactcaaaaagaaaaggaaatggcaagccacgctcaaat
agagataagaaattttcaagaagcaggtctagaaaatag
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