Terrihabitans soli: IZ6_02250
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Entry
IZ6_02250 CDS
T07468
Symbol
ligT
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
tso
Terrihabitans soli
Brite
KEGG Orthology (KO) [BR:
tso00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tso03016
]
IZ6_02250 (ligT)
Enzymes [BR:
tso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
IZ6_02250 (ligT)
Transfer RNA biogenesis [BR:
tso03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
IZ6_02250 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
BCJ89490
UniProt:
A0A6S6QRH9
LinkDB
All DBs
Position
201170..201751
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AA seq
193 aa
AA seq
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MAMPRLFTALEVPADIGAQLAILRGGLPGARWIDAENYHVTLRFLGDVDDRTANEAAHLL
DGIAREPIQISIGELDAFGGDRPRSIIAKVKPNPDLLELQAEHERNMRRAGLAPESRKYT
PHVTLARLRDVKPRDVADWLSTRGGAPRLDFEAKRFVLLSSRASSGGGPYVLEESFPLGV
GEEDEDHHDEAHW
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
ttggccatgccccgtctgttcacagctctggaagtgccggccgatattggagcccagctc
gctattctgcgcggcggtctgccgggcgcacgctggatcgacgccgaaaactatcacgtt
actttgcgctttctcggcgatgtcgatgaccgcaccgccaatgaagcggcgcaccttctc
gacggcattgcgcgcgagcccatccagatttccatcggtgagctcgatgcgttcggcggc
gaccgcccgcgttcgatcatcgccaaggtgaagccgaacccggatctgctggaacttcag
gccgagcatgagcgcaatatgcgccgcgcaggccttgcgcccgaaagccgtaaatacacg
ccgcatgtcactttggcgcgtctgcgcgatgtgaagccgcgcgatgtcgccgattggctg
tcgacgcgcggcggcgcgccgcgtctcgatttcgaagccaaacgctttgttcttctgtcc
tcgcgtgcctcgagcggcggcgggccctatgtgctggaagagagctttccgctcggcgtc
ggcgaagaggacgaggatcatcatgacgaagctcactggtaa
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