Terrihabitans soli: IZ6_13040
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Entry
IZ6_13040 CDS
T07468
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tso
Terrihabitans soli
Pathway
tso03410
Base excision repair
tso03430
Mismatch repair
tso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IZ6_13040 (recJ)
03430 Mismatch repair
IZ6_13040 (recJ)
03440 Homologous recombination
IZ6_13040 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tso03400
]
IZ6_13040 (recJ)
DNA repair and recombination proteins [BR:
tso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
IZ6_13040 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IZ6_13040 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IZ6_13040 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
CDC45
Motif
Other DBs
NCBI-ProteinID:
BCJ90569
UniProt:
A0A6S6QNN8
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Position
1247480..1249288
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AA seq
602 aa
AA seq
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MPTPQALQTPAPREAAPALLGVNSSFTGRFWRERLDSQGQSLALAIAQRHGVPEVLARVL
AGRGIGLDAVGDYLSPNIRSLLPEPYRFTDMEAAARRIARAVEAGERVAIFGDYDVDGAT
SSAVLASLLKAAGTPHRIYIPDRIFEGYGPNAEAIKTLAEEGAKLLVTVDCGTTSHAALA
EASRLRMDVVVLDHHQVGETLPEVAALVNPKRHDDISGHDYLAAVGVVFITVVAVNRLLR
QNGFWTAERSEPDLLSLLDLVALGTVADVVPLTGINRAFVIRGLQAMGQRRRPGLRALAD
AARMRGAPSPYHLGFLIGPRINAGGRIGRAELGALLLTCDDEAESQKLALELDRLNGERQ
EVEKGVLADAEMKADLSADVVMASGMGWHPGVVGLVAARLKERASKPAFAITFSNGVGTG
SGRSIPGVDIGAAVRAAVEEGLLVKGGGHAMAAGITVEETRFDAFAAFLRARLASDVAAA
RREDVLKIDGVLTAASLTPGLYDEIQRAGPFGAGNSEPIFALSGHILMSVEEVGSGGHLR
LRLKAPDGSAVTAMAFRAVGQPLGEVLPLNRGKPVEVAGCLQKDEWNGRTSVSMRVLDAA
AG
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgcccactcctcaggccctccagaccccggcgccccgggaagccgctcctgcgctttta
ggggtgaattcctccttcacgggaaggttctggcgcgagcggctggatagccaagggcaa
agcctggccctggccatcgcccagcgccacggcgtgccggaggtgctggcccgcgtcctg
gcgggaaggggcatcgggcttgatgccgtcggcgattatctcagccccaatatccgctcg
cttctgcccgagccctatcgcttcaccgatatggaggcggccgcccggcgcatcgcccgc
gccgtggaggcgggcgagcgggtcgcgatcttcggcgattacgatgtcgatggcgccacc
tcctcggcggtgctcgcgagcctgttgaaagccgccggaaccccgcaccggatctatatt
cccgaccgcatttttgagggctatggccccaacgcggaggccatcaagacgctggcggag
gagggcgcaaagctcctcgtcacggtggattgcggcacgacgagccatgccgctctggcc
gaagcatcaaggctccgcatggatgtcgtcgtgctcgatcatcatcaggtcggagagacg
ctgcccgaggtcgcggcgctggtgaatcccaagcgccatgacgacatttcgggccatgat
tatctcgccgcggtcggcgtcgtgttcatcacggtcgtcgcggtcaaccggcttctgcgc
caaaacggtttctggacggcggagcggtccgagcccgatcttctgtccttactcgatctc
gtggcgctcggcacggtcgccgatgtcgtgccgctgacgggcatcaaccgcgccttcgtc
attcgcggcctgcaggccatgggccagcgccgccgtccgggcctgcgggcgcttgcggac
gcggcgcgcatgcgcggtgcgccgagcccttatcatctcggttttctcatcggcccgcgc
atcaatgccggcgggcgcatcggccgcgccgaactcggcgcgctgctgctcacctgcgac
gacgaagcggaatcgcagaagctcgcgctcgaactcgatcgtctcaacggcgagcgccag
gaggtcgagaagggcgtgctggcggacgccgagatgaaagcggacctttccgccgatgtc
gtcatggcttcgggcatgggctggcatccgggcgttgtcggccttgtcgccgcgcggctg
aaagaacgcgcctcgaaaccggcattcgcgatcacgttttcgaacggtgtcggtacgggg
tcgggccgctcgatccccggcgtcgatatcggggcggccgtgcgcgccgcggtggaagag
gggcttctcgtcaaaggcggcggccatgccatggcggcgggcatcaccgtcgaggagaca
aggttcgacgccttcgccgcgtttttgcgcgcgcgtcttgcatccgatgtcgcagccgcg
cggcgcgaggatgtgctgaagatcgacggggttttgacggcggcctccctgacgcccggg
ctctatgacgagatccagcgcgccgggccgttcggcgccggcaattccgagcccattttt
gccctgtccggccatatcctgatgtcggtcgaagaggtcggctcgggcgggcatttgcgg
ctccggctgaaggcaccggacgggtcggcggtcaccgccatggccttccgggcggtcggc
cagccgctcggcgaagtgctaccgctcaaccgcggaaagccggttgaggtcgcgggatgc
ttgcagaaagatgaatggaacggccgtacctcggtatccatgcgcgtgctggatgcggcg
gcaggataa
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