Terrihabitans soli: IZ6_14910
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Entry
IZ6_14910 CDS
T07468
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tso
Terrihabitans soli
Pathway
tso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IZ6_14910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tso03019
]
IZ6_14910
Messenger RNA biogenesis [BR:
tso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IZ6_14910
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
TyrRSs_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BCJ90756
UniProt:
A0A6S6QMZ4
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Position
1428952..1430622
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AA seq
556 aa
AA seq
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MSTDQTHELVFLPLGGVGEIGMNMSLYGYGPPRQRKWIMVDCGVTFGHASETPGVDLILP
DIRFAEAEKHNILALLLTHGHEDHIGAVLDLWPRLNIPVVATPFTAGLLAAKREGERNAP
NVPVQVVAPHGKVAFGPFSVEFVPVAHSIPEANALAIRTPAGLVVHTGDWKLDKKSTTSG
VTDEARFRALGEEGVLAVIGDSTNAVRDGHSASELDVSQTMVDLIKTAPARVAVTTFASH
IPRIRTVADAALAVGREIVVVGRAMERTVQVARETGFLDGVPEFRSTDVFGFLPPENALL
LLTGSQGEPRAALARIATDDHPEISLSKGDRVIFSSRTIPGNEREVNRIINNLIDRGIEV
VTDRDRMVHVSGHPRRGEMEELYSWLKPKLIVPVHGEPLHLFEHEKLAKKLGIACGNVRN
GQMLRLSPGKAEIIDETLSGRLYKDGDLLITNDEPVRERRRLAFAGVVSVAVALDNRGEI
ASDAEIQISGLPDKDAEGDTFADIVHDAVLDALENLPRNKRRDPDFVSDALRRAVRAEIN
ASWGKKPLVQVMVVVV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgatcaaacccacgaactcgtctttctgccgctcggcggcgtcggcgagatc
ggcatgaatatgagcctttacggctatggtccgccgcgccagcgcaaatggatcatggtc
gattgcggcgtgaccttcggccatgcgtccgagacgccaggcgtcgatctcattttgcct
gatatccgttttgccgaggccgagaagcacaacatcctcgctctgcttctgacccacggc
catgaagaccatatcggcgccgtgctcgatctgtggccgcgcctgaatatcccggtcgtc
gcaacgccgttcacggcgggcctcctggcggccaagcgcgaaggcgaacgcaacgcgccg
aacgtgccggtccaagtcgtcgcgccccatggcaaagtggcgttcggcccgttcagcgtt
gaattcgtccccgtcgctcattccattcctgaagcgaatgctttggcgatccgcacgccg
gcgggccttgtcgtccatacgggcgactggaaactggacaagaaatcgacgacgtcgggc
gtcaccgatgaagcgcgattccgcgcgctgggcgaggagggggttctcgccgtcatcggc
gattccaccaatgccgtccgcgacggacactcggcctccgaactcgacgtgtcgcagacc
atggtggatctgatcaagacggcgccggcgcgcgttgcggtcacgaccttcgcctcgcac
attccgcgcatccgcaccgttgcggatgccgctcttgctgtcggacgcgagattgtcgtc
gtcggccgcgccatggagcgcacggtacaggtcgcgcgcgaaacgggctttctcgacggc
gtgccggaatttcgttcgacggacgtgttcggctttctgccgccggaaaatgcgctgctt
ctgcttaccggcagccagggcgaaccgcgcgccgccttggcacgcattgcaaccgacgat
catccggaaatcagcctctccaagggcgatcgcgtcatcttttcctcgcgcaccattccc
ggcaatgagcgcgaggtgaaccgcatcatcaataatctgatcgatcgcggcatcgaagtc
gtcaccgaccgcgaccgcatggtccatgtctccggccatccgcgccgcggcgagatggaa
gagttgtattcctggctgaagccgaagctcatcgtgccggtgcatggcgagccgctgcat
ctgttcgagcatgagaagctggcgaaaaagctcggcattgcctgcggcaatgtccgtaac
ggccagatgctgcgcctttcgcccggtaaggcagagattatcgacgagacgctgtcggga
cgcctttacaaggacggcgatcttctcatcaccaatgacgagccggtgcgcgaacggcgc
cgtctcgcctttgccggcgtcgtgtcggtcgcggttgcgctcgacaatcgcggcgaaatc
gccagcgatgccgaaatccagatttcgggcctgccggacaaggacgccgagggcgacacc
ttcgccgacatcgtccatgacgccgtgctcgatgcgctggaaaacctgccgcgcaataaa
aggcgcgaccccgatttcgtctccgatgcgctgcgccgcgccgtccgggccgagatcaat
gccagctggggcaagaagcccctcgttcaggtcatggtcgtggtcgtctga
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