Terrihabitans soli: IZ6_16870
Help
Entry
IZ6_16870 CDS
T07468
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tso
Terrihabitans soli
Pathway
tso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IZ6_16870 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tso03400
]
IZ6_16870 (mfd)
Enzymes [BR:
tso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IZ6_16870 (mfd)
DNA repair and recombination proteins [BR:
tso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IZ6_16870 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BCJ90952
UniProt:
A0A6S6QUM3
LinkDB
All DBs
Position
1627367..1630870
Genome browser
AA seq
1167 aa
AA seq
DB search
MSKQADLLARGGQLSFAHAPDGLDALVIADLARQLARGNRDAPAALLHIARERTRMHAME
RALAFFAPDIDVLSFPAWDVLPYDRASPNSAISAQRMTTLARLARTKQGDRPRIVLTTAN
AAVQRIASRKQIASQSLSVAPGNAVDLDGLILWLENNGYLRNSTVRDTGEYAVRGGILDL
YPPGHPAPVRLDFFGDTLESIRPFDPETQRSIGQLRALDLVPVSEVLLTEDTMRRFRQSY
VKEFGAAERGDALYEAISEGRRYPGLEHWLPLFTDGLETIFDHLPGAVIALDHLAEDAAA
QRLAQAADYFEARAEGLEQGAGGTPYRPLPPDRLYLTGGALSERLKSVGVARIHPFEADT
PNVDTVDILGKPSRNFAPERADDNANVFEAAARHIAALNESGKRVIVAAWSDGARERLAT
VLGDHGLGDSRTVQDWGEAQGLPKGQIALAVVGLEAGFETPDAAIVAEQDILGDRLVRGR
KKTRRAQDFLSEVTALSAGDLVVHVDHGIGRYKGLQAIEVSGAPHDCLEIHYAGDAKLFL
PVENIELLSRYGSEDTEVQLDKLGGAGWQTRKARLKQRIREIAGELIKVAAARAMKDATR
LLLADGMYDEFAARFPYEETEDQQNAINATLDDLAAGRPMDRLICGDVGFGKTEVALRAA
FVTAMNGKQVAVVVPTTLLARQHYKTFAERFRGFPLKVAQASRFVAASEMKAVREGLSTG
DVDVVIGTHALLAKNISFKDLGLVIVDEEQHFGVVHKERLKQLRAEVHVLTLTATPIPRT
LQLALTGVRELSIIATPPVDRLAVRTSVVPFDPLIVREALLRERYRGGQSFYVVPRIEDI
PTITAFLRDHVPEVKFAVGHGQMAAGELEDVMTAFYEGKYDVLVATTIVESGLDIPNANT
LIIHRADMFGLAQLYQVRGRVGRSKTRAYALMTTPENKALTANAEKRLKVLQSLDSLGAG
FQLASHDLDIRGAGNLLGDEQSGHIREVGYELYQQMLEEAVAALKEGGEVEADQWSPTIA
IGTPVLLPESYVEDLDLRLGLYRRLASLTDDASIDAFGVELADRFGPPPPEVGHLLRIVG
IKSLCRRANVDKIDAGPKGAVLSFRDNRFDNPDGLIAWLSQEHDVKLRPDFRLVFRRDWD
TAEERLKGTTSLLRKIVEIAEKNRKAA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcaggccgatcttctcgcccgcggcgggcagctttcctttgcccatgcccct
gacggcctcgatgcgctggtgatcgccgatctcgcgcgccagctggcgcgcggcaatcgc
gatgcgccggcagcgctcctgcacatcgcgcgcgagcgcacgcgcatgcatgccatggag
cgggcgctggccttctttgcgcccgatatcgacgtcctgagtttccccgcctgggatgtg
ctgccttatgaccgcgcctcgccgaattcggcgatctcggcgcagcgcatgacgacgctc
gcgcgccttgcccgcaccaaacagggcgacagaccgcgcatcgtgctgacgacggcgaat
gctgcggtgcagcgcatcgccagccgcaaacagatcgcctcgcaaagcctgtcggtcgcg
ccgggcaatgcggtcgatctcgacgggcttatcctgtggcttgagaataacggctatctg
cgcaattcgacggtgcgcgataccggcgaatatgcggtgcgcggcggcattctcgatctt
tatccgccgggccatccggcgccggtgcgtctcgactttttcggcgacacgctggaatcg
atccgtcctttcgatcccgaaacgcagcgctcgatcggccagctgcgcgcgctcgatctt
gttccggtcagcgaggttcttctcaccgaagacaccatgcggcgcttccgccaatcctat
gtgaaggaattcggcgcggccgaacgtggcgatgcgctctatgaagcgatcagcgaaggc
cgacgctatcccgggctcgaacattggctgccgctgttcaccgacgggctcgaaaccatt
ttcgatcatctgccgggcgctgtgatcgcgctcgatcatctggcggaagatgccgccgca
cagcgccttgcgcaggccgccgattatttcgaagcacgcgcggagggcctcgagcagggc
gcgggcggcacgccctaccgcccgctgccgccggaccggctctatctgaccggcggtgcg
ctcagtgagaggctgaagagtgtcggcgtcgcgcgcatccatccgttcgaagccgacacg
ccgaatgtcgacaccgtcgatattctcggcaaacccagccgcaattttgcgcctgagcgt
gccgacgacaatgccaatgtcttcgaggctgccgccagacacatcgcggcgctgaacgag
agcggcaaacgcgtcattgtcgccgcctggtcggacggagcgcgtgagcgccttgcaaca
gtgctcggcgatcacggcctcggcgacagccgcaccgtgcaggattggggcgaggcgcaa
ggcctgccgaaaggccagatcgctcttgcggtcgtcggccttgaggcggggttcgaaacg
ccggatgccgcgatcgtcgccgaacaggacattctcggcgaccgccttgtccgcggccgc
aagaagacgcggcgcgcgcaggatttcctgtccgaagttaccgcgctttccgccggcgat
ctcgtcgtccatgtcgatcacggcatcggccgctacaaaggccttcaggcgatcgaagtc
tccggcgcgccgcatgactgccttgaaattcactatgcgggcgatgcgaagctctttctg
ccggtcgagaatatcgagctgttgtcgcgctacggctcggaagataccgaagtccagctc
gacaaactcggcggcgccggatggcagacgcgcaaggccaggctgaaacagcgcatccgc
gagatcgccggcgaactcatcaaggtcgccgcggcccgcgccatgaaggatgcaacgcgg
cttcttctcgccgacggcatgtatgacgaattcgccgcgcgcttcccgtatgaagaaaca
gaagaccagcagaacgccatcaatgcgacgctcgatgatcttgcggcgggccgcccgatg
gaccgcctcatctgcggcgatgtcggcttcggcaagacggaagttgcgctgcgcgctgcc
ttcgtcacggcgatgaacggcaaacaggtcgcggtcgtcgtgccgacgacgctgctcgcc
cgtcagcattacaaaacctttgccgaacgcttccgcggcttcccgctgaaagtcgcgcag
gcttcgcgctttgtcgccgcgagcgaaatgaaagcggtgcgggaggggctgtcgaccggc
gatgtcgatgtcgtcatcggcacgcatgcgcttctggcgaagaatatttctttcaaggat
ctcggcctcgtcatcgtcgacgaggaacagcatttcggcgtcgttcacaaagagcgtttg
aaacagctgcgcgccgaagtgcatgtgctgacgctgacggcaacgcccattccacgcacg
ctacagctggctctcactggcgtacgcgaactgtcaatcatcgcaacgccgccggtcgat
cgtctggccgtgcgcaccagcgtcgtgccgttcgatccgctgatcgtgcgcgaggctttg
ctgcgtgaaagatatagaggcggccagagcttttatgtcgtgccgcgcatcgaggacatt
ccgaccatcaccgccttcctgcgcgatcatgtgccggaggtgaagttcgcggtcggccac
ggacaaatggcggcgggcgaactcgaagacgtgatgacagccttctatgaaggcaaatac
gatgtcctcgtcgcaacgacgatcgtcgagagcggcctcgatattccgaacgccaatacg
ctgatcatccaccgcgccgatatgttcggcctggcgcagctctatcaggtgcgcggccgt
gtgggccgctcgaagacgcgcgcttacgcgctgatgacgacgccggagaacaaggcgctg
accgccaatgccgaaaagcggctgaaagtcctgcaatcgctcgacagtctcggcgccggc
ttccagctcgcctcgcacgatctcgacatacgcggcgccggcaatcttctcggcgatgag
cagtccggccatatccgcgaagtcggctacgagctttaccagcagatgctggaggaggcc
gtcgccgcgctgaaagagggcggagaggtcgaggccgatcagtggtcgccgacgattgcg
attggaacgccggtccttcttccggaatcctatgtcgaggatctcgatcttcgcctcggc
ctttaccgccgtttggccagccttaccgacgatgcgagcatcgatgcatttggcgtcgag
cttgccgaccggttcgggccgccgccgccggaagtcggccatctcttgcgcattgtcggc
atcaaatcgctgtgccgcagagccaatgtcgacaagatcgatgccgggccgaagggtgcc
gtgctgtccttccgcgacaaccgtttcgacaatccggacgggctgatcgcctggctgtca
caggaacacgacgtgaagctgcggccggatttccgcctggtgttccgccgcgattgggac
acggcggaagagcggctgaagggcacgacgagcctcctgcgcaagatcgtcgaaatcgcc
gaaaagaaccggaaagctgcttag
DBGET
integrated database retrieval system
