Terrihabitans soli: IZ6_18320
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Entry
IZ6_18320 CDS
T07468
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tso
Terrihabitans soli
Pathway
tso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IZ6_18320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tso03019
]
IZ6_18320
03009 Ribosome biogenesis [BR:
tso03009
]
IZ6_18320
Enzymes [BR:
tso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IZ6_18320
Messenger RNA biogenesis [BR:
tso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IZ6_18320
Ribosome biogenesis [BR:
tso03009
]
Prokaryotic type
rRNA processing factors
IZ6_18320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BCJ91097
UniProt:
A0A6S6QT08
LinkDB
All DBs
Position
1782999..1785668
Genome browser
AA seq
889 aa
AA seq
DB search
MANKMLIDAAHPEETRVVVARSGNRIEEFDFESANRKQLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFSEIHPDYYQIPVADRQALLAEEERESREDDEAEEEKREGRGRRRRRGR
GSKAKDAPKGETVSEELNAEDSEGAEGTEDTEAEDAEELEAAAAEEAEEAEREAAEAEQE
AQEEAAADAAASAGTSETSSETAPGDVVEVRDEAKDEIESVGAETNVEEEMPQRREPRRM
RHYKIQEVIKRRQVLLVQAVKEERGTKGAALTTYLSLAGRYSVLMPNTARGGGISRKVTN
AADRKKMKEIAEDLEVPEGMGVILRTAGANRTKAEVKRDFEYLLRLWETVRENTLQSTAP
ALVHEEGSLVKRAIRDLYNKDIDEVLVSGEGAFKEAKDFMRMLIPSHAKNVKLYRDQIPI
FTRFGIDAQLDAMFSNVVTLKSGGYIVINQTEALVAVDVNSGRSTREHNIEDTALRTNLE
AAEEVSRQLRLRDLAGLIVVDFIDMEENRNNRAVEKRLKDCLKHDRARIQVGRISHFGLL
EMSRQRIRTGVLESSSDVCPVCAGSGRVRSVPSVALHVLRIIEENLLRNSGFNINVRTTN
AVALYILNQKRGHLRDIETRFGVEITFISDEHLAVGEHCVIQRGEPSTGTPIAPQLTPVP
VDEIDDAEIEDDDAEDGEENAEGGEVRAERAERGERAGRERSEGDDSEGGRRRRRRRRRG
RGRGGEGREDREDRPMQTAETGDVEGGVIEADEDSASAAIMTDKPQRSGTAEGDSEAEGR
RPRRRGRRGGRNRNRNGAPKDGDVEFAQSEGDIPDTADDEDDEDEAPAAEAKPAEAKPAA
AKAAPAPAPVAAIGEDDAEDAPAKPRRRVESTPPPEQPKRAGWWNRLKG
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaagatgctcatcgacgccgcccatccggaggagacccgggtcgtggtggcg
cgcagcggcaatcggatcgaggaattcgatttcgaaagcgcaaaccgcaaacagcttcgc
ggcaatatctatctagcgaaagtcacgcgcgtcgagccgtcgcttcaggcggccttcgtc
gaatatggcggcaaccgccacggcttcctcgcgttcagcgaaattcatccggactattat
cagatcccggtcgccgaccggcaggctctgcttgccgaagaagagcgcgagtcgcgcgag
gacgacgaggctgaagaagaaaagcgcgagggccgcggccgacgccgccgccgcggacgc
ggcagcaaggccaaggacgctccgaagggcgagacggtcagcgaagagctgaacgccgaa
gactccgaaggcgctgaaggcacggaggataccgaggccgaggacgccgaggagctcgaa
gccgccgctgccgaagaagcagaggaagccgagcgcgaagcggccgaagccgaacaggaa
gctcaggaagaagccgcggccgacgccgccgcctcggccgggacatccgaaaccagttcg
gaaacggctcccggcgatgtcgtcgaagtgcgcgacgaggcgaaagacgagatcgaatcc
gtcggcgccgaaacgaatgtcgaagaagagatgccgcagcgtcgcgaaccgcgccgcatg
cgtcattacaagatccaggaagtcatcaagcgccgccaggtcctgctcgttcaggcggtc
aaggaagaacgcggcaccaagggcgcggcactgacgacctatctgtcgttggccggacgc
tattcggttctgatgccgaacaccgcgcgcggtggcggcatttcgcgcaaggtcaccaat
gcggccgaccgcaagaagatgaaggaaatcgccgaggatctcgaagtgccggaaggcatg
ggcgtgatcctgcgcaccgcaggcgccaaccgcacaaaagcggaagtgaagcgcgatttc
gaatatctgctgcgtctgtgggagacggtgcgcgagaacacgctgcagtccaccgcccct
gccctcgtccatgaggaaggctcgctggtcaagcgcgcgatccgcgatctctacaacaag
gatatcgacgaagttctcgtctccggcgaaggcgccttcaaggaggccaaggacttcatg
cgcatgctcatcccgagccatgccaagaacgtcaaactctaccgcgaccagatcccgatc
ttcacgcgcttcggcatcgatgcgcagctcgacgcgatgttctcgaacgtcgtcacgctg
aaatcgggcggctatatcgtcatcaaccagacggaagcgctggttgccgtcgacgtgaac
tcgggccgctcgacgcgcgagcacaatatcgaagacaccgcgctccggaccaatctggaa
gcggcggaagaagtctcccgccagctccgcctgcgcgaccttgccggcctcatcgtcgtc
gacttcatcgacatggaagagaaccgcaacaaccgcgccgtcgaaaagcggctcaaggat
tgtttgaagcacgaccgcgcccgcatccaggtgggacgcatctcgcatttcggccttctc
gaaatgtcgcgccagcgcatccgcaccggcgttctcgaaagctcctcggatgtctgcccg
gtctgcgcgggctccggccgcgtgcgttcggtgccgtcggttgcgctgcacgtgctgcgt
atcatcgaagagaatttgctgcgcaattcgggcttcaacatcaatgtgcgcacgaccaat
gcggtcgcgctctacattctgaaccagaagcgcggtcatctgcgcgatatcgaaacgcgc
ttcggcgtcgagatcaccttcatctccgatgagcatctggcggtcggcgaacattgcgtc
attcagcgcggcgagccgtcgacgggaacgccgatcgcaccgcaactgacgccggtgccg
gtcgatgaaatcgacgatgccgaaatcgaagacgacgatgccgaggacggcgaggaaaac
gccgaaggcggcgaagtccgtgcggagcgcgccgagcgcggtgagcgtgccggacgcgag
cgttccgaaggcgacgacagcgaaggcggacgccgccgccggcgccgcaggcgccgcggc
cgcggacgcggcggcgaaggccgtgaggatcgggaagaccggccgatgcagacggccgag
accggcgatgtcgaaggcggcgtgatcgaagcggacgaagactccgcctcggccgccatc
atgaccgacaagccgcagagaagcggaaccgctgaaggcgatagcgaagctgaaggccgc
cgcccgcgccggcgcggacgccgcggcggacgcaaccgcaaccgcaacggcgcgccgaag
gacggcgatgtcgaattcgcgcagagcgaaggcgatattccggatacggcggatgacgag
gatgacgaggacgaagcgcctgccgctgaggccaagccggctgaagcaaagcccgctgcg
gcgaaggcggctccggctcccgcgcccgtcgccgcaataggcgaagacgatgcggaagac
gctccggccaaaccacgccgccgcgtcgaatccacgccgccgcccgaacagccgaagcgc
gccggctggtggaaccggctgaagggctaa
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