KEGG   Trichinella spiralis: Tsp_00088
Entry
Tsp_00088         CDS       T01609                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
tsp  Trichinella spiralis
Pathway
tsp03013  Nucleocytoplasmic transport
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_00088
  09122 Translation
   03013 Nucleocytoplasmic transport
    Tsp_00088
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_00088
   03041 Spliceosome [BR:tsp03041]
    Tsp_00088
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     Tsp_00088
Spliceosome [BR:tsp03041]
 Complex C
  Other components
   EJC/TREX
    Tsp_00088
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    Tsp_00088
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40 WD40_Prp19 ANAPC4_WD40 EIF3I Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WDR55 Beta-prop_Aladin Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_IFT140_1st eIF2A Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_Vps41 PAC11 RMC1_N Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N TRM82_WD Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_Nup120_160 Beta-prop_LRRK2 Beta-prop_NOL10_N Cytochrom_D1 WD40_RFWD3 Beta-prop_WDR41 DPPIV_N PD40 Tricorn_2nd
Other DBs
NCBI-GeneID: 10901399
NCBI-ProteinID: XP_003375926
LinkDB
Position
Unknown
AA seq 364 aa
MLPVKPALKENCKKLTKLLKGYSTTTFKDGLQANIHSLAWNYDGTRLASGGNDKNVCSFI
LNDNSELIREHTFRGHSHQVDQVCWHRSSADLIASASGDKTVRVWDVRSRKCVATVDTKG
ENIYLDWSPDGSTIAVGNKEDLISFIETRTFSVVTTEQFSIETNQFRWNNTNSLFFICNG
NGQIIVLSWPNLERLSVIQAHPSTILCIEFDLSGEYFAIGGLDALISLWDARNLICLRTF
ERYGCFSIEHSSFICCIHLHRTENICSEIICSRLDWPVQTISFSHDSALLASGSEDLFVD
IAHVETGEFNSKICTSQSEKFFFYSAHVKIIYTIILIFVENFTCSLGQAATAVKSLYMCI
YSRR
NT seq 1095 nt   +upstreamnt  +downstreamnt
atgctaccagtgaagccagcgttgaaggaaaattgcaaaaaattgacgaaattgttaaaa
ggttattcgacgaccactttcaaagacggacttcaagctaatatccactcgttggcttgg
aattacgacggaacacgcctcgcctcgggtggcaatgacaagaatgtctgctcatttatt
ttaaatgataacagtgaattgatccgcgagcacacatttcggggacacagtcatcaagtg
gatcaagtttgctggcatcgcagcagtgcagatttgatcgcttcggccagcggcgacaag
acggtccgagtttgggatgttcggagccggaagtgcgtggccacggtcgataccaaaggc
gaaaatatttatttggactggtcgccggacggttccacaattgccgttggaaacaaagaa
gatctgatttcgtttattgaaacgcgcaccttttccgtcgtcaccaccgaacaattcagc
atcgagaccaaccaattccgatggaacaacaccaacagcttgtttttcatatgcaacggc
aatgggcaaattattgttctcagttggcccaacttggaacgtttgtccgttattcaagcg
catccttcaacaatattgtgcattgaattcgatttatcaggcgaatattttgccatcggc
ggtttggatgcgttgatcagtttgtgggatgcgagaaatctcatctgtctcaggactttt
gaaaggtatggttgcttttcgattgaacattcttcatttatctgctgcattcatcttcac
cgaacggaaaatatttgcagtgaaattatttgttctagacttgattggcctgttcaaacg
atcagctttagtcacgacagtgctctgcttgcatcgggctcagaagatttgtttgtcgat
attgcacacgtagaaactggtgagttcaattccaaaatttgcacttcacaaagtgaaaaa
tttttcttctattctgctcatgtgaaaataatttacacgattattttaatttttgttgaa
aattttacttgttcacttggacaagcagcaactgctgtcaaaagtttatatatgtgtata
tatagtaggagatga

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