Trichinella spiralis: Tsp_00115
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Entry
Tsp_00115 CDS
T01609
Name
(RefSeq) putative PDZ domain protein
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
LIM
PDZ_2
Motif
Other DBs
NCBI-GeneID:
10901372
NCBI-ProteinID:
XP_003375900
LinkDB
All DBs
Position
Unknown
AA seq
970 aa
AA seq
DB search
MTRSNQALFELLLARQFLLIAPGRPWIQTFFCLCVSKLGIPEGNLFHITDFEEHLYNSIR
CSDGTCQENQSRICRVVVTVYELALLCEKSTRYTGPRIDRTAVEPLVAYYVENRYINTMD
SKQNKKLEQDNDRKINFKSSFTETFCAHIAFDHISNCLLISLVANNPATNEITESEESGY
DSSVKGLMNHSKVPLAPKSLPAAVNQLVHEKVRKYLTEQVVIGERNEDQMSECQFSDTLR
SLSPEDYSPPPSSAGTSYCTSRDHHYYGMVQKNPYQFLSSSPPHCSLKEYRRLWKMNEMK
MRKYNEQKSKRTKIDMKWVDQFNLWKEKRRAKFESSHLTEDATSSINVVESEREKVQPSG
VLSKRSEVSPLNASGGVCSELTTTMPTESPKKEFTMIVENKTLEQATTSLQENKQLANSF
DRKLSLEDSGHFGGESDDTDERLSASPGTLDSPSSNVTRLNININGKQDVKLLTMGNYGL
QKSENGIRRVSADGSELTYVCNLVRFQKERNFGFTLKGGLNSGEPLRIDQVTPGLSADRA
GVKAGDILVSVNGALVRDDLIGKANMMIKEAVFVSHVELVLEKSEKEQSETNSAISTPRK
LSSSSKDFTATGQSNSTNLFLQRRAMFEKLSAAESDAHPAKTDFRSEPKTEIIEDMKEIS
AQKIPYVNNTNIGNSVTSRPNVGYRVVSMYEPRQPGRISDFIPEYERKEETSNNYASTYN
AMNECVTGSYRRTPSDCCPTLIRNYDLGNCNTNLAVGMALPSYRDEISFVDFEAEPDDAS
LIGNNRNVTNSWRAVDNNTSMEFKYWNMAANAAELDASVLGCNNNNSAVMNGNSNFCSNT
KSAAASSMRHQAYNHWLVQEAEHRRLSDQLLSERTARNNHPDEGKKKMPTPQAVSASHLC
SHCNKELGHGAAMSIESLKLFYHLSCFKCYVCGVKLGDGAVGADVRVRCGKLHCQSCYSN
DEAGYRLSEV
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgatcaaaccaggctttattcgaacttttgctggcacgtcagttcctcctgatc
gctcctggtcgaccttggatccaaacatttttttgcctctgcgtttcgaaattgggtatt
ccagaagggaatttgttccatattacagattttgaagaacacttgtataattctatcagg
tgttctgacggaacttgccaagaaaatcaaagtcgcatttgccgagttgtcgttactgtg
tacgaattagcattactctgcgagaaatccactcgttatactggtccacgaattgatcga
actgcagtagagccattagtagcttactacgttgaaaatcgttatattaatacaatggat
tcgaaacaaaataagaaactcgaacaagacaatgacaggaaaattaactttaagtcaagt
tttactgagacattttgcgcccatattgcatttgatcatatatccaactgtttgcttatc
agtctcgttgcaaacaaccctgcaacaaatgaaataactgaaagtgaagaaagtggttat
gatagctctgtgaaaggcttgatgaaccacagtaaagtaccattggcgcccaaatcactt
ccagcagctgtgaatcagcttgttcatgaaaaagtcagaaaatatctgactgaacaagtg
gtaattggtgagagaaacgaagatcaaatgtctgaatgccagttttccgacactcttcgg
tctctgtcaccagaggactattcaccaccgccaagcagcgctggtacaagttactgtaca
tccagagatcatcactactatggaatggttcaaaaaaatccttatcagtttttgtcttca
agtcctcctcattgttcattgaaagaatatagaagattatggaaaatgaatgaaatgaaa
atgaggaagtacaacgagcaaaaatctaaaaggacgaaaattgatatgaaatgggtagat
cagtttaacttgtggaaagaaaagcgaagggctaaatttgaaagcagccatctaacagaa
gatgcgacgagctccattaatgttgttgaaagtgaaagggagaaagtgcagccttccggc
gtattgtcgaagcgttcagaagtttctccattgaacgcaagtggtggagtttgtagcgag
ttgacgacaaccatgccgacggaatcaccgaaaaaagagtttacgatgatagtggaaaat
aaaactcttgaacaagcgacaacatcattgcaagagaacaaacaattggctaatagcttt
gatagaaaattgagcttggaagatagtggacatttcggtggcgaatcggatgatactgat
gaaagactttcagcaagcccaggaacgcttgattcaccgtcatctaatgtgacaaggtta
aatattaacataaatggcaagcaggatgtgaaattgttgactatgggcaactatggtcta
caaaaatcagaaaacgggattcgacgtgttagcgcagatggctcagaactcacttatgtc
tgtaatttggtgcgctttcaaaaagaacgaaattttggcttcacgttgaaaggcggtctc
aattccggtgaacctttgagaattgatcaagttacaccaggcctttctgctgatcgtgct
ggcgtcaaagctggcgatattttggtatcagtgaatggtgctttggttcgagatgatttg
atcggcaaggctaatatgatgataaaagaggcagtatttgtatctcatgttgagttggtt
ttggaaaagtcagaaaaagagcaaagtgaaacgaattctgccatctcaacgcccagaaag
ttgagttcatcaagcaaagattttacagccacaggccagtcgaattcaacaaatttgttt
cttcagcgaagagcaatgtttgaaaagctgtctgcagctgaaagcgatgctcatcctgct
aaaaccgattttcgaagtgaacccaagactgaaattattgaagatatgaaagaaatttct
gcacagaaaattccatatgtaaataatacaaatattggaaattcagtgaccagtcgaccg
aatgttggctatcgtgtagtttccatgtatgagcctaggcaacctggacgcatatctgat
ttcattccggaatatgaacgcaaagaagaaacatcgaataattacgcgagcacctataat
gcaatgaatgaatgtgtcacaggaagctatcgacgaaccccatctgactgttgtccaact
ttgattcgcaattacgatctcggaaattgcaatacaaatttagcagtcggtatggctttg
ccttcttacagagacgaaatttcatttgttgattttgaagcagagcctgacgatgcatca
ttgattggcaacaatagaaatgtgactaacagttggcgagctgtagacaacaacaccagc
atggaattcaaatattggaacatggctgccaatgcagctgaactagatgcttccgttttg
ggatgcaataacaacaacagtgcagtaatgaatggcaacagcaacttttgcagcaacacg
aaaagtgcagcagcttcgtcaatgcgacatcaggcatacaatcactggcttgtacaggaa
gcggaacatcggcgtctgtccgaccaattgctttctgaacgcactgctagaaataatcat
ccagatgaagggaaaaagaaaatgccaacaccgcaagcagtaagcgcaagtcacctttgt
tctcactgcaacaaggaacttggtcacggagctgcaatgagcattgaatcattgaaactt
ttctatcacttgagttgtttcaagtgctatgtttgtggtgtaaagcttggcgatggagcc
gtaggagcggatgttcgtgttcgatgcggtaaattgcactgccagtcttgctacagcaac
gacgaagcaggctaccgtctcagtgaagtttga
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