Trichinella spiralis: Tsp_00218
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Entry
Tsp_00218 CDS
T01609
Name
(RefSeq) putative S1 RNA binding domain protein
KO
K14792
rRNA biogenesis protein RRP5
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_00218
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
90S particles
Other 90S particles
Tsp_00218
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lectin_leg-like
S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Suf
S1_RRP5
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
TPR_19
ARM_TT21_C
TPR_CcmH_CycH
ARM_TT21_5th
PG_binding_2
Motif
Other DBs
NCBI-GeneID:
10901497
NCBI-ProteinID:
XP_003376023
LinkDB
All DBs
Position
Unknown
AA seq
2154 aa
AA seq
DB search
MRKTSVEEMFVLLLIIVWCNSFTVSSTTIPSGTPVDEQRGFNRREHSLSKPYQNTGFNIP
FWNFGGSTIVTSDYVRLTPDSPSRQGFLWNTIPVVVRDWELEVTFSVHGVEKGLFGDGMA
IWYAEEPGVLGPVFGSKDMFRGLAVFLDTYTNHQDAHNHAHPYISAMVNNGSLRYDHDRD
GTHTQLGGHDSGCTAKFRNKEFPTRILIRYVGDTLSVYTDILGKAVWDLCFAVDRVSLPK
RYFFGMTAATGDLSDAHDIISVRMFEIEYQRVERAGYDTRGAVPQAEYISAPRDHVEDNP
PPSKLSTLKYGFLFILGLIGIGILVVAASGKTMIEVAFPRGGDHRGQINFKKRKSLLPPD
LHGRRKKFKTLDKLKSKATTVSENNHKVDDDFASRVWTKKLNNETCVAGLLTVACVHYCW
DTEVNVEMPGNMNGILKASSVSQSFVDHVQAKREDEEAATLASLFEPAELICVKVIDKEM
RQFASGKMHTTWLVTTNPADLNAHITPSTLRKHAVIGCAVRSVEEKGYLMDLGFQNVHGF
LSFAEACRFYPENKQLPIGKPILCTVVEPAAATGGRVVQLNCLNGQLNGTDVPKIDENFP
KSLLMPGLLCRTTVQQHCQQGLICKLNSDLYGWLSLADSPKRRKRALANEQSLQGAVELM
VTYSLPQSSMVGFSSADYLLRRTRLVERFSFDAKGSLQTCKVRRSTPEKVQFITDSGAIV
NVANCRLRKPVGKKKKSTEKYKLATKHRVRMIGMSTLKMVYHGSCLACDVRQPFSKIDEA
AVGLRVTAKVVRVSDTAALVKVFHTFDGKIDALHFSDGLVSVGCRAKFVVGQTVPTRVLA
VDKDLQRLYLTAKRSLVKSDLPLLSAYTAEAVGNVYDGFVVQLLERSGVLIGFYNNVRGV
LDERAFQLAGYQKQSPTDVYHVGQVVRVLVVRVDVDKRRIDLALPECSARGLQWMLGCSG
KVSNSKLEADVGQCARAGGSKRKPPPFFELLKAEVKALRDDWLLVELVEYGVSARLPSAH
LTDSLTTGHLLLASFRVGDKLDVVLFNSVKGLVVTAKPSLLYLMRNMQAPRSLDDLKCGQ
LVTGVLARVHPEHGYFIDLPGNMSALCPKSKVEWKCETDAGLANLIGATVVGRVMTVNPQ
AGKLIINLKLKKCLLNGLHTSIALLKQYLEERELLSQRFRNPSNTDWKRRLLSKYQIGQL
VECTVGMVVESGLICTVEDGVPGIFVSELLDPHWNVEYAVGSSLTGLVVCVNYSERCLEL
AAMKQLLANFRQVALRRRRHQPAVGDSLTATVLVANADCVLLSTAGHGLCYMSARLHYND
FSLPRLKNPDKRQLRVRVQAYTTSGQCLVSSVRDEQLCSKIERRLRSAISVQPSIESGTA
PVIEEKGVAMAVGRLYSASVLSVDNRYVHLFIAGRYRGRIFATELDDQFLQDGSEPLKTV
RLGTTVTVKVIGTKRIRKGGSLMAECTMKSSKLFSKRNKKTIIGYKENFVIGEELNVLVV
ERKRHHFNVVVNPRWSGEVSFYTVDPRSAWRNGQLRKVYVLDVDVEKRWLKLSALKPAMV
ELKENGYTFGKLLSRDDKDLSTKLCFSMLGGARGVASLVDICDNYDHAVDKWRLLQVESY
YKLFVVGKLENNFWHVSLRPSLTGENSSEANNATIRDDPLYSLASELAVGNVYRGFVSKV
RHYKKGLTVLLGHELFGNVPCGLISECTDAVRLDQTFPIGTVVTVKVMSLDKSNGNLTLS
MLSKDTGLPDQVPEKCRKLLQSDDSISSQAQLVLNKAEESPAALPLRACSWFESAATKTL
IDVSLNADNVSDGTLMVNGKHGAFIANGNQCSSAASGENDYELEVAEREGKSKLELDRLD
EEEVLKKELMLMDPERPIETVEDYDRALVASPSSSMLWIRYMAYFVQCNEIDKARSVASK
ALKTIAYNEEKERFNVWIALMNLENEYGTGETMDETVRNALLVNDQQQVYLQLLKIYDRS
KKLDAADAVTEVLLKKYRSQFDVWITVGKHFMQTNRAEKAHAIMERAMKSLPFNMHVDLM
SRFAQMEFKFEGDVERGCTIFENILNDHPRRFDIWLVYVDLMAKHRNIDEARPLLRRVTS
LKMSAHKMRSFFKKWLELENRYGTAETVADVKSRATDYVNNVFSDFDELKQDYQ
NT seq
6465 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaaacgagtgttgaagaaatgtttgttttgcttcttattattgtttggtgcaac
agttttacagtatcttcaactacaattcccagcggtacacctgtagatgaacaacgtggt
ttcaatagacgtgaacattcgttgtccaagccttatcaaaatactggttttaatattcca
ttttggaattttggtggctcaacaatagtgacatccgattatgttcgtctcacaccagat
tctcccagtcgtcaaggatttctttggaatacaattccggtggtggtgcgtgattgggaa
ctggaagtgacgttcagtgttcatggagttgagaaaggtctgtttggtgatggtatggca
atttggtatgctgaagagcctggtgttctgggtcccgtttttggaagcaaagacatgttc
cgtgggcttgccgtttttctcgacacttacaccaatcatcaagatgctcacaatcatgcc
catccatatatttctgcaatggtgaataatggcagcttgcgttatgatcatgatcgagat
ggaactcacactcaactcggtggccacgacagtggatgtacggcgaaatttcgaaacaag
gaattccctactcgcattctgattcgatatgttggggatactctttcagtatacacggat
atccttggaaaagcagtttgggatctttgttttgcagttgatcgcgtttctttaccaaag
cgttattttttcggtatgaccgctgcaacgggagatttgtcagatgctcatgatattata
agtgttagaatgtttgaaattgaataccaaagggttgaaagagctggctatgacaccaga
ggggcagttccacaagcggaatacatatcggcgcctagagatcatgtagaagataaccca
cctccgtcgaaattgtccacattgaaatatggatttctgttcatacttggtttaattggt
attggaatacttgtcgttgccgcaagtggaaagacgatgattgaggtcgcttttccgaga
ggcggtgaccatcgtggtcagattaatttcaaaaaacgaaagagtctgttaccgccagac
ttgcacggtcgacgaaagaagttcaaaacgttggacaaattgaaatccaaagcaacaacc
gtatctgaaaataatcataaagtggacgacgattttgccagtcgtgtctggactaagaag
ttgaacaatgaaacttgcgtagcaggattgttgacagttgcatgtgtacattattgttgg
gatacggaagtgaacgttgaaatgccgggcaatatgaatggcatattgaaagcgagttca
gtgtcccagtcgtttgtcgatcacgttcaagcaaaacgcgaagacgaagaagcggctacg
ttggcttcgctgttcgagccggctgaattgatctgtgttaaagtgatcgacaaagagatg
cggcagtttgcatccggaaaaatgcacacaacttggttagtgacgaccaatccggcggat
ttgaacgcccacataacgccgtccacgttgcgcaagcatgccgtcattggatgcgcggtt
cgcagtgtcgaagagaagggctatttgatggatttgggttttcaaaacgtgcacggcttt
ctctcatttgccgaagcttgtcgattttatcctgaaaacaagcaacttccaattggcaag
ccgatattgtgcactgtggtcgaaccagccgccgccactggtggcagggttgttcaattg
aactgcttgaatggtcaactgaacggcaccgacgtgccgaagatcgacgaaaatttccca
aaatcgttgctcatgcctggcctgctttgccgaaccaccgtgcagcagcattgtcagcag
gggctgatatgtaaattgaattcagatttgtacggctggctgtcgttggcagattctccc
aaacgacggaaacgtgccctcgccaatgagcagtccttgcaaggcgctgtcgaactgatg
gtcacttacagtcttccgcagagttcgatggtcggcttttcctcggcagattatttgctc
agacgaacgcgattagtggaacgcttttcattcgacgccaagggttctttgcaaacgtgc
aaagttaggcgatcaacgcccgagaaggtgcaatttatcaccgactccggtgccatcgta
aacgtggccaactgtcgattgaggaaacctgttgggaagaagaagaagtccactgaaaaa
tacaagctggcaaccaagcaccgggtgcggatgattggcatgtcgacgttgaagatggtt
taccacggttcttgcctggcctgcgatgtcaggcagccgttttcgaaaattgatgaagcg
gcagttggactcagagtgacggccaaggtggttcgcgtgtcggatacagccgctctggtg
aaagtgttccacacgttcgacggaaaaatcgacgccttgcacttcagtgacgggcttgtt
tccgtcggttgccgagcgaaattcgtcgtcggtcaaactgtgccgacgagggtgttggcg
gtagacaaggatttgcagcgcttgtatttgaccgccaagcgcagcttggtcaaatccgac
ttgccacttttgtcggcttacactgcagaagcggtgggaaatgtgtacgacggctttgtg
gtgcaattgttggaacgcagcggcgtgctgattggtttttacaacaacgtgcgcggcgtg
ttggacgaacgtgccttccagttggccggctaccagaagcagagtccgacggacgtgtac
cacgtcggtcaggtggttcgggtgttggtggttcgagtggacgtcgataagcgacgtatc
gatttagctttgcctgaatgttcagcacgtggcctgcagtggatgttgggatgcagtgga
aaagtgtcgaattcgaagttggaagccgatgttggtcaatgcgcccgtgccggaggttcc
aagaggaaaccaccgccgttctttgaactgcttaaggccgaagtgaaagccttgcgagac
gactggcttttggtcgagctggtcgagtacggtgtgtcggcgcggctgccgtcggctcac
ttgaccgactcgttgactacgggtcatctgctgttggcgagttttcgagttggcgacaag
ctggacgtcgtgctgttcaacagtgttaaggggttggttgtgacggccaagccgagcctg
ttgtatttgatgcgcaacatgcaggcgccgagatcgctggatgatctgaagtgtggtcag
ctagtgaccggcgtgctggctcgtgtgcatcctgagcacggctatttcattgacttgcct
ggcaacatgtccgccttgtgtccgaagtcgaaggtggaatggaaatgtgaaaccgacgct
ggacttgcaaacttgatcggagcgacggtcgttgggcgcgtgatgacggtgaatccccaa
gctggaaagttgatcataaacttgaaactgaaaaagtgtctgctcaacggcttgcacacg
agcattgctttactgaagcagtacctggaagagagggaactgctgtcgcagcggtttcga
aatccgtcaaacacagattggaaacgtcgcctgttgagcaaataccagattggtcaactg
gtcgagtgtacggtcggtatggtggttgagtcgggcttgatctgcaccgtggaagatggt
gtgccggggatttttgtctccgaactgctcgatccacattggaacgtcgaatacgcggtc
ggttcgtctctgaccggcctggtggtttgcgtcaactactcagagcgctgtttggagctg
gcagcgatgaaacagcttctggccaatttccgccaagtggcactgcgtcgccggcggcac
cagccagccgttggtgactcgctaacagccactgtgctggtcgccaatgccgattgcgtg
ctgttgtcgaccgccggccacggcctgtgttacatgtcggctaggcttcactacaatgac
ttctccttgccgcgtttgaagaatcctgacaagcggcagctgcgggttcgcgtccaagcg
tacacaacatctggccagtgtttggtgagcagcgtgcgcgacgagcagctctgttccaag
attgagcggcgcctgaggtcggctatttctgttcaaccgtcgattgaatcgggcaccgcg
ccagtgatcgaagagaagggtgtggcgatggccgtcggtcgcctctattccgcctcggtg
ctgagcgtggacaaccgttacgtgcatttgttcatagctgggcgttaccgcggtcggatt
tttgccactgaactcgatgaccaatttttgcaggacggctcagaaccgctgaagacagtc
cgacttggcaccacggttactgtgaaagtgatcggtacgaaaaggattcggaaaggtggc
agcttgatggccgagtgcacgatgaagagcagcaaattgttttccaagagaaacaagaaa
accatcattggctacaaggaaaacttcgtcataggcgaagagttgaacgtgctggtggtc
gaacggaaaaggcaccatttcaatgtggtagtgaacccgcgttggagcggcgaggtcagt
ttttacactgtggatccgcggtcggcttggcgtaacggtcagttgaggaaagtgtacgta
ctggatgtggacgtggaaaagcgatggctgaaattgtcggctctgaagccggccatggta
gagttgaaagaaaacggctacacattcggcaagcttctttcacgcgacgacaaagatttg
tcgaccaagctttgcttcagcatgctcggcggtgccagaggtgtggcttcgttggtggac
atttgcgacaactatgatcatgccgttgataaatggcgactgttgcaagtggagtcttat
tacaagttattcgtagtggggaaattggaaaacaacttttggcacgtcagtttgagaccc
agtctcaccggcgaaaacagctctgaggcgaataacgcaacgataagagatgatcctctg
tattctttggcatctgagttggcagttggcaacgtatatcgtggttttgtttcgaaagtg
cgtcattacaaaaagggtttgacagttttgctcggtcatgaactttttggcaacgtgcct
tgcgggttgatcagcgaatgcacagatgctgtcagattggatcaaacgtttccaattggt
actgtcgtgacagtgaaggtgatgagcttggacaaatcgaacggcaatttaacgttgtca
atgttgtccaaagatacgggactaccggatcaagtgccggaaaagtgtcgaaaacttctt
caaagcgatgattccatttcttctcaagctcagcttgttttgaacaaagcggaagaaagt
cctgccgctctgccccttcgagcatgttcttggtttgaatcggcggccactaagactctt
atcgatgttagcttgaatgcagataatgttagtgatggaacgttgatggtcaacggtaag
catggtgcattcattgcaaatggtaatcagtgcagttcggccgcctcaggcgaaaatgac
tacgaattggaggtagcagagagggagggcaagagtaaattagaattagatcgactggac
gaagaggaagttttgaagaaggagttgatgcttatggatcctgagcgaccgatcgagact
gtcgaagattacgatcgtgcgttggtcgcctcgcccagttcgtctatgctgtggattcgt
tacatggcctattttgttcagtgcaacgaaattgacaaagctcgaagtgtagcttcaaaa
gcgctgaaaaccattgcatataacgaagaaaaagagcgttttaatgtgtggattgcgttg
atgaatttggaaaatgaatatggtactggtgaaactatggacgaaactgtgcgcaatgct
cttttagtcaacgatcagcagcaagtctatttgcaactgttaaaaatttatgacagatcg
aaaaaacttgacgctgcagatgctgtaactgaagtgttattgaaaaaatatcgctcccag
tttgatgtttggataactgttggcaaacattttatgcaaaccaacagagctgaaaaagcg
cacgctataatggaacgggcgatgaagtcgttgcctttcaacatgcatgtagatttgatg
tctcgatttgcgcagatggagttcaagtttgaaggagacgttgaacgaggatgcacaatt
tttgaaaatatcctcaacgatcacccaaggcgttttgacatctggttggtgtatgtggat
ttgatggcaaaacacaggaacattgatgaagcaaggcctctactgcgacgtgttacatct
ttgaaaatgtcagctcacaaaatgcgaagctttttcaaaaaatggcttgaattggaaaac
cgatatggcactgccgagacagtggctgatgtgaaaagccgagcaaccgactatgtcaat
aatgttttttcagatttcgatgaactaaaacaagattaccaatga
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integrated database retrieval system
