Trichinella spiralis: Tsp_00260
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Entry
Tsp_00260 CDS
T01609
Name
(RefSeq) putative HEAT repeat-containing domain protein
KO
K06677
condensin complex subunit 1
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_00260
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Chromosome condensation proteins
Condensin I
Tsp_00260
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cnd1
Cnd1_N
HEAT
Nipped-B_C
WXG100
RTP1_C1
Motif
Other DBs
NCBI-GeneID:
10901507
NCBI-ProteinID:
XP_003376033
LinkDB
All DBs
Position
Unknown
AA seq
1868 aa
AA seq
DB search
MKEQLIKCYIIFIENQNVAKISLLQADKQFSAMRNKLNGEKQICPVIMSKRSFCLLAVYA
SDEGKRFIYEFREKSSAEHKQIYIKIMDTEFSFPCSFKDLVVNRNEEFYVEVLSDKNIIL
SKFQEYKDSYDTNLLENFVSNFNVFYSAIEHFSKFDKADLIEIWHSLVLVNSNIYHELVN
LLDDFAECSAYSKQSLRNIFSMNMFLLIHLALEFENEKPQKCSEVQLNDEPKKSGKGKRV
VQNNDLWRDESQGFLELCCRMLSLDLKKLWAPALVDERLIDGIGEFCQKMLHPWKAPRKQ
CLLKAFDLLIHTYNHGISKFDDFTEIEKQQSFVVLAFAVQLIQSLAAADTNPEKIAEMVS
NLANSDSETFLVEILKELSQVDAAALLNEGASARNYSVFLVEVANLIPDCVLRNISLLVP
FLTEDSFTFRNGVLTTFSVLISKKLTGEDLPESLVTLRTQFFKHLLEHIHDISGNVRSKA
LQLFTKLVLEKCVPLNEYKLLMPLAIGRLADKLPTVRKAAIQLLGSILSNNPFMKKVTIE
ELQSRLETEKKNLENLVYSGNKESEAQDSVNEKWTIARNRMSDILDELIEKYWEDGSLNL
PDELCNFEDVSDIISLSALNCIVDGNYRETVLRFIHFGKLHPDSALLASVFDTHCTSAEF
KRNLLDAIKFVFLDLIMASVIADGPLAEEIREKVMQGDQVQRQKVVIRFIEDSICFLQQV
HSILPLITEMLYQNQLSDVLESIDFLVNCVSHDVSSNNETIWKCFELVWSTQEAVRNGAL
NAFRKLCVDIDSEFNASYIIEMRIQRLLTIMEKATDSQYFTLAKLVSIALKKGILENFNL
MPAWDIIQNNKDTLEKKKIALKIICINDKSVLRGNIKRLAVFGLSENADFHSAYLVLCTL
SKLGWYDRQGNLKFLEEIACEVEECSLFCRVMRFLLDGVTNYDDNYWIAAMEYGVRLIFY
AAPNPDVICASFLKSLSAKSEEESKKEQHYPLFLTRMLSAFGQSNQLKKSRNTNEQVNNN
EKKSVDSVFGLDTVASLEDRDRDFVNKICEEYVLKDGTFLGEYSKLVIKICKQPIKYSYA
PLQAAVAETLMKLMFISQKFCAENCRLLVTMLEKSKFPIVRRTIMTLLPDLYARHPNEIE
YWTRRVHSRIFDENLSVRVCSISIMSYLVLHNLTKPGRMLADIALCTVDENPTIVSLAKR
FFKEYSEKAATFFSILPDISGQLSLKYNEIGAEKSWQICKFLYSFINKERQNESFIDKLC
ERFVIAKNVEHCHILAKCLTLPTYNERLIRKVAESMKCYEEKLKDDTVLQCFLSIVDSAK
RTWKGDGKERLDMLQAELKEKHEKYQATEMHFAADNSILNPEEPVVVEASSDPSPTENVG
QAYVNKLRRSFHHQMESAEWSFLKTICPDLDDTIADMDLNGKDEADTQLKTAVEDSENAV
DKQKSSDEMVNNDKTNPNDGRLSVTTDLNSAKTKAAASRPRKRMAFDDDSFSISKRADDD
QRDSTSDKEITSQSVLRNDNNKEEKSLLEKRKATKNASKKSQSAADDRVENLTESSDDEP
AMTKKPKKTNMKTDRRSIDTGKSSVTKQQSTSTPKDSALKKSKHRKYFIQESSSESDDDS
KEHNFFAYLTKFNIKTPFDSSKVSEVDENTAKRRAEKKKGFLSSSHDDDSNCNFEEAPIT
KSSILMKRQKGKREVSSESDEEEEEEVSVMRTRLSTLRSRQLKAERNKKEQRKLKAAKNA
SAMQIDSSSSDSEDELLNIKLRFGAAQRGKKLNGSKAESKETTKSSSYLRPNIMNWDDIT
NSMNRSTRKSRESSGNISDGSGSKNSSSSNGSSSSSSSSSSDDGGKMEMLNKTASQRRNI
LKNFRKAR
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagcaattgataaaatgttacatcatttttatcgaaaatcaaaatgttgcaaag
atttcgcttttgcaagcggacaagcagttttcagcaatgcgtaacaaactcaatggtgaa
aagcagatttgtccagttatcatgagcaagcggagcttttgtttattagcagtttatgct
tctgacgaaggcaaacgttttatctacgagtttcgagaaaaatcttcagcagagcataag
cagatttatataaaaatcatggacacagaattttcttttccgtgtagttttaaagattta
gtggtgaaccgcaatgaagagttttacgttgaagtcttatcggataagaatattatttta
tcaaaatttcaagaatataaagactcgtacgatacaaacttattggaaaatttcgtcagt
aactttaatgtgttttacagcgccatagagcatttttcaaagtttgataaagcagatctc
atagaaatatggcattcacttgttttagttaatagtaatatttaccatgaacttgtgaat
ctgcttgacgattttgcagaatgcagcgcgtattcaaaacagtccttgcgaaacattttc
tcaatgaatatgtttcttcttattcacttagcactcgaatttgaaaatgaaaagcctcag
aaatgttctgaagtccaacttaatgatgaaccaaaaaagagtggaaaagggaaacgagtt
gttcaaaataatgatttatggagagatgaaagtcaaggttttcttgaattatgttgccgc
atgttgtcacttgatttgaaaaagctgtgggccccggctttagttgacgagcgtttaatc
gatggaattggtgaattttgtcaaaaaatgcttcatccgtggaaggctccaagaaagcaa
tgtttattaaaagcgttcgatttgttgattcacacctataatcatggaattagtaagttt
gatgattttactgaaattgaaaagcaacagtcttttgttgttttagcttttgctgtgcaa
cttattcagtcactggctgctgccgatacaaatccggaaaaaatcgcagaaatggtttct
aacttggcaaatagcgatagcgaaacctttcttgttgaaatattgaaggaattgtcccag
gtggatgcagctgcacttttgaatgaaggcgcttcagctcgaaactacagtgtttttctg
gtggaagttgcaaatttgattccagattgtgtcttaaggaacatcagtttgcttgttcca
tttttgacagaagattcatttacatttcgtaatggtgttttgactacattctctgtactg
attagtaagaaactgacgggcgaagatttgcccgaatctctggtaacgctgagaactcag
tttttcaagcatttattggagcatatacatgatattagtgggaatgtacgcagcaaagcg
ttgcaattatttactaagcttgttttggaaaaatgtgttccattgaatgagtataagctt
cttatgccacttgcaattggacgcttagctgacaaacttcctacagttcggaaagcagct
attcagcttcttggtagcattttaagcaataacccttttatgaagaaggtgacaattgag
gagcttcagagtcgtctggaaacagagaagaagaatttggagaatcttgtttattcggga
aataaggaaagtgaagcacaagattcagtgaatgaaaaatggacaattgcaagaaatcgt
atgagcgatattcttgacgaactcatagaaaaatattgggaagacggtagtctgaatctt
ccggatgagctttgcaattttgaagatgtttcagatataattagcttgtctgcgttgaat
tgtatagtggatggtaattacagagagacagttctgcgttttatacattttggcaaattg
catccggacagtgcattgttagcgtcagtttttgatacacactgcacttcggccgaattt
aagcgaaaccttttagatgcgataaaatttgtttttctggatttgatcatggcttctgta
atagctgatggaccgttggctgaagaaatccgagaaaaagttatgcaaggggatcaagtg
caacggcagaaggttgtcatacgattcattgaggatagtatatgctttttgcaacaagtg
cattcgattttgccattgattaccgaaatgctgtatcagaatcaactgtccgatgtgctc
gaatcaattgactttttggttaactgtgtttcacatgatgtgtcaagtaacaatgaaaca
atatggaaatgttttgaattggtgtggtctacacaagaagcggtacgaaatggcgctttg
aatgcttttcggaaactttgcgtagatattgactcagaattcaatgcaagttatattatc
gaaatgagaatacaaagattgttgaccatcatggaaaaggcgaccgattctcaatatttc
actttagcaaagcttgtatcaatagcattgaagaaaggcattcttgagaattttaattta
atgccagcttgggacataattcaaaataacaaagacactttagaaaagaagaaaatagct
ttgaaaattatatgcattaatgataaaagtgtgcttcgtgggaacatcaagcgattggct
gtgtttggtttatctgaaaacgctgacttccattctgcttatttagtattgtgcactttg
tccaaattgggatggtatgacaggcagggtaatttgaaatttttggaagaaattgcttgc
gaagtagaagaatgttcactattttgtcgtgtaatgcgcttcttacttgacggtgtcact
aattatgacgataactactggatagcggcaatggaatatggagttaggctcattttttat
gctgctccaaatccagatgttatttgtgcatcttttttgaaatcattgtccgcgaaaagt
gaagaagagagcaaaaaggaacaacattatccattatttctgaccagaatgctttctgca
tttggccagtcaaaccagcttaaaaagtcaagaaatactaacgagcaagtcaataataat
gaaaagaaatcggttgattcggtattcggtttggatactgtcgcatcccttgaagatcga
gatcgcgattttgtgaacaaaatatgcgaggaatacgttcttaaagatggtacttttctt
ggtgaatattcgaaattggtgataaagatatgcaaacaaccgataaagtacagctatgca
ccgttgcaagcagcggtggcagagacactgatgaagctgatgtttatcagtcaaaaattt
tgtgcggaaaactgtagattgcttgtcactatgcttgaaaaatcgaaatttccaatcgta
cgacgaaccataatgacattgctgccagacttgtacgcacgtcatcctaatgaaattgaa
tattggactagacgtgttcactcgagaatttttgatgaaaatttgtcggtgcgagtgtgc
agcatctccattatgagttacttggttttgcataatttgactaaaccaggtcgaatgtta
gcggatattgctctctgtactgttgacgaaaatcccacgatagtttcattagctaaacga
tttttcaaagaatattccgaaaaagcagcgaccttcttttccattttaccggacattagt
ggtcagttgtcgttgaaatacaatgaaattggagcagagaaaagttggcagatttgcaaa
tttttgtattcttttataaacaaggaacgccaaaatgaaagtttcatcgacaaattgtgt
gaacgttttgtcattgcaaaaaatgttgaacactgtcatatattggcaaaatgtttgacc
ttgccaacgtacaatgaacgtttgattcgcaaagtggcggaaagcatgaaatgctatgaa
gagaaattgaaagatgatactgttttgcagtgctttttatcaatcgtagactcagcaaag
cgtacttggaaaggcgatggaaaagaaagattggatatgttgcaagctgaattgaaagaa
aagcatgaaaaataccaagcgacggagatgcattttgctgctgacaattctattcttaat
cctgaagagccagtagttgtagaagcatcatcagatccaagtccaactgaaaatgttggt
caagcgtacgtgaataagcttcgtcgaagtttccatcatcagatggaatcagcggaatgg
agcttcttgaaaactatttgtccagatttggacgataccattgcagatatggatttgaat
ggaaaagatgaggcggatacgcaactgaaaacagcggtagaagattctgaaaatgctgta
gacaagcagaaatcatcagatgagatggtgaataatgacaagaccaaccctaatgatggt
cgtttgtcagtgacaactgatttgaattcagcaaagacaaaagcagcagcaagtcgacca
agaaaacggatggcattcgatgatgacagtttttccatttccaagagagctgatgatgat
cagagagatagtactagcgacaaagaaatcacaagtcagtcagttctccgtaatgacaat
aataaagaagaaaaatcattattggaaaaacgaaaggcgacgaaaaatgcttccaaaaag
tcgcagtctgctgctgatgatcgagttgagaatttgacggaaagcagtgacgacgagcca
gcaatgacgaaaaaacccaagaagacaaatatgaaaactgaccgcagatctattgacact
ggaaaatcaagcgtgacgaagcaacagtctacttcaaccccaaaagattcagcattaaaa
aaaagcaaacatcgcaaatattttatccaagagtcgagcagtgaatccgatgatgattcc
aaggagcataatttttttgcatatttaaccaagttcaatattaaaacaccttttgattca
tcaaaagtttcagaagttgatgaaaacactgctaagcggcgggcagagaagaagaagggg
tttttgtcgtccagccacgacgatgatagtaattgtaattttgaagaagctcccatcacc
aaatcgagcattttgatgaaaagacaaaagggaaaaagggaggtgtcgagtgaaagtgat
gaagaagaagaagaagaagtgtcggtgatgcggacaagattgtccacgttgagatctcgg
caattgaaagctgagcgaaataaaaaagaacagagaaagttgaaagcagctaaaaatgca
tcggcaatgcaaatcgattcatcaagctcagatagcgaggatgagttattaaatatcaag
ttgcgttttggagcagcgcaacgaggtaaaaaactgaatggtagtaaagctgaaagtaaa
gaaacaacaaaatcaagttcatatttgagaccgaatatcatgaattgggatgatatcacg
aattctatgaacagaagtacgagaaaaagcagagaaagcagcggaaatattagtgatggt
agtggcagtaaaaatagcagtagcagtaatggtagtagtagtagtagtagtagtagtagt
agtgatgacggtggtaagatggaaatgttgaataaaactgcatcccagaggcgaaacatt
ctgaagaactttcggaaagctcgttag
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