KEGG   Trichinella spiralis: Tsp_00348
Entry
Tsp_00348         CDS       T01609                                 
Name
(RefSeq) putative transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
tsp  Trichinella spiralis
Pathway
tsp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Tsp_00348
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_00348
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_00348
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     Tsp_00348
   Coactivators
    SAGA/TFTC/STAGA complex
     Tsp_00348
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     Tsp_00348
    STAGA complex
     Tsp_00348
    TFTC complex
     Tsp_00348
    SAGA complex
     Tsp_00348
    SLIK complex
     Tsp_00348
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd PIG-X Beta-prop_WDR90_POC16_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_Vps41 TFIID_NTD2 Beta-prop_WDR19_1st Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_DCAF4 VPS8_N WD_LRWD1 pP_pnuc_1
Other DBs
NCBI-GeneID: 10901749
NCBI-ProteinID: XP_003376268
LinkDB
Position
Unknown
AA seq 928 aa
MCIVKIIYILLFCGFFTYLYSNELSLKKDFKITGDGFHRQLSNFIYLSSMNRLVNCSVVY
RVTVPSGAYLDVDQMPASIRNMFYSYKPFFVEAPAWTSVDQTVLIESSKRMYNAFIFEDV
IEFPIHFRYQKPTKGGLIVKVRFYAPDVLLRCLDPKFLDLLNFTGGADDSRLVEAPCNFY
YNYTSTLLCLYLHVKESSVSYADIDIPTPDISYKVPVTIGLILCIIYSFCTTVYTLLACC
SETTGDFRDVIFRHSAVLLHQNDFEKKILISMAEMSDMQIDVDEYSRINEKAKCTFRLLD
LLGASETRSAFINGLQARSAEITDARDYFKPPSQFERDEFAKRKFESAVKEYSTLISMLK
QSVSDRCHPELSVFNFTVYAAIFADFCYNDQFDLARDFLEKFLPIQECYYESIIEEFSLV
LDEQDVQFCLPLRELKSNRIVVRLSRESISEFRELIKSLPLISDIVEARFELDTSDEPAR
SYETVERYRGYLLGEAPLKMMKTKVYSGIFKDQALPILADDSTRFFDIDGDSEKPKKKKS
KSKDSTTTRKQKADPNAPAWGRIPFGQLSDTWKLKRHQMLSEINRKPKANVELRPTAIFY
AVENSDEAIDAITTSEDCKLLFLGYSNSSITMRSLNEEPLPTLKRAEELESLNVDSDDIY
TEMLEANPTEVEYVLTGHSGEIYSLSYHEEKHMLLSCSQDKSIRLWNLLTRDNLVAYHYD
VCEPTDVQFSTFGSYFVSGYFDGAVCLWALDRPSPLRVMLGHYDLVGRVRFHPNCNYVAS
CSEDRAVRIWDLLNGQCVRLFTGHKASVQALEFSYDGRWLASGGEDGRVLVWDIGSGKMM
HDFINHRGIVYSLAFTRDSRVLASGGTDRNIVIKSLVSQTSSTVVNDTNLLSSTTHSREH
TFGVEAASAQYLRFSLRNVLFAFGGVGQ
NT seq 2787 nt   +upstreamnt  +downstreamnt
atgtgtattgtaaaaattatatatattcttttattttgtggatttttcacttatctgtat
tcaaatgaactaagtttgaaaaaagattttaaaattactggtgatggttttcatcgacag
ctttccaactttatttacttgagtagtatgaacagattggtgaattgttctgtcgtttat
cgagtaacagttccatctggagcctacttggatgtagatcagatgccggcttcaattcgc
aacatgttttattcatataagccattttttgttgaagctccagcttggacttcagtcgat
caaactgtactgatagaaagttctaagcgtatgtataatgcatttatttttgaagatgtg
attgagtttccaattcattttcgttaccaaaagcctacaaaaggcggtttaattgtgaaa
gttcgcttttacgctcctgatgttttgctgcgatgcttggatccaaagtttcttgattta
ctcaatttcaccggtggtgcagatgattccagacttgtagaagctccatgtaatttttat
tacaattataccagtactttgctatgtctttatttacatgttaaagaaagcagcgtttct
tatgctgatatagatattcctactcctgatatttcttataaagttccggttacaattggt
ttaatattatgtattatttacagtttttgtacgacagtatatacattactggcatgttgc
tctgaaactacaggcgattttcgggatgtaatttttcgtcattcagcagttttgttgcat
caaaatgattttgaaaagaaaattttaatttcaatggcagaaatgtcggatatgcaaatc
gacgttgatgaatacagtagaataaatgaaaaagcgaaatgcacgtttcgtctgctggat
ctgttgggtgcatcagaaacgcgcagtgctttcataaacggattgcaggctcgttcggca
gaaataacggacgctcgtgattatttcaaaccgccttctcaatttgaacgtgacgaattt
gcaaagcgtaaattcgaatcggccgtcaaagagtattccacgttgatcagcatgttgaag
cagtcagtcagtgatcgatgtcatcccgaactcagtgtgttcaattttaccgtctatgca
gcaatttttgccgacttttgttacaatgatcagtttgatttggcaagagattttctggaa
aaatttctcccaattcaagaatgttattatgaaagtattattgaagagttcagtttggta
ttggatgaacaagatgtgcaattttgtttaccgctgagagagctgaaatcaaatcgaata
gttgtccgtttgtccagggagtccatctcggaatttcgagagttgatcaaatcgctcccg
ctgatatcggatattgtcgaagcacgtttcgaactggatacgagcgacgagccggctcgc
agttacgaaaccgtggaacgttaccggggttatttgttgggcgaagctccgttgaaaatg
atgaaaaccaaagtctattcgggcattttcaaggatcaagcattgccaattctagccgac
gattcgactcgtttcttcgatatagatggcgattcagagaagcctaagaagaaaaagtcg
aaaagcaaagattcgacgacgacgagaaagcaaaaagcagatccaaacgccccagcttgg
gggcgaattcctttcggacagctgagcgacacttggaagctgaaacgtcatcagatgttg
agcgaaattaaccgaaagccgaaagcgaatgttgagctgcgacctacggcaattttttac
gctgtagaaaattctgacgaagcaatcgatgcaatcactacgtcagaagattgtaaattg
ttattcttgggatacagtaattcgagtataacgatgagatcgttgaatgaagaacctttg
ccaacgctgaaacgagccgaagagttagaatcgttgaacgtcgactcggatgatatctat
acagagatgctggaagcgaacccaaccgaagtcgaatacgtgctcactggccactcgggt
gaaatttacagtctcagttatcacgaggagaagcatatgctgttgtcttgttctcaggat
aagtcgatccgtttgtggaatttgctcactagggacaatttggttgcctatcattatgat
gtttgtgaaccaacggacgttcagttcagtaccttcggaagttattttgtttccggctat
ttcgacggtgcggtttgtttgtgggcattggaccgtccttcaccattacgtgtcatgctt
ggtcattacgatttggttggcagggtacgattccatccgaattgcaactacgtggccagt
tgttctgaggatcgagcagttcgaatttgggatctgctcaatggccagtgtgtgcgcttg
ttcactggacacaaggccagcgtgcaggctttagaattttcctacgacggccgttggtta
gcgtccggtggtgaggatgggcgggtgctcgtatgggacattggctcaggcaaaatgatg
cacgacttcattaatcaccgtggtattgtttactcgcttgcattcaccagggacagtcgg
gtattggcttctggaggtactgatcgcaatattgttatcaaatcacttgtttctcaaact
tcttcaactgtagtcaacgacaccaatcttctgagctccactactcactcaagagaacat
acgtttggggttgaggccgcttctgcgcagtatttgcgattcagtctacgaaatgtttta
tttgcttttggtggtgtaggccaataa

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