Trichinella spiralis: Tsp_00388
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Entry
Tsp_00388 CDS
T01609
Name
(RefSeq) eukaryotic peptide chain release factor subunit 1
KO
K03265
peptide chain release factor subunit 1
Organism
tsp
Trichinella spiralis
Pathway
tsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Tsp_00388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_00388
03012 Translation factors [BR:
tsp03012
]
Tsp_00388
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
Tsp_00388
Translation factors [BR:
tsp03012
]
Eukaryotic type
Release factors
Tsp_00388
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
acVLRF1
baeRF_family10
Motif
Other DBs
NCBI-GeneID:
10901709
NCBI-ProteinID:
XP_003376231
LinkDB
All DBs
Position
Unknown
AA seq
466 aa
AA seq
DB search
MASSGGNGLDDSSADRNVEIWKVKRLIKSLEAARGNGTSMISLIIPPKDQILRASKMLAD
EYGTASNIKSRVNRLSVLGALTSVQARLKLYNKVPPNGLVIYCGTIVTDEGKEKKVNIDF
EPFKPINTSLYQCDNKFHTEALQALLADDNKFGFIVMDGNGALFGTLQGSSREVLLKFTV
DLPKKHVCSQFILTRMTLFLTRNTIIVIVVECVVESRGGQSALRFARLRLEKRHNYVRKV
AETAVQMFITNDKVNISGLVLAGSADFKSELGQSDMLDQRLQAKILKIVDVSYGGENGFN
QAIELSADALHYVKFIQEKKLISKYFDEISQDTGKYVYGIDDTLRGLEMGAVETLICWEN
LDIIRYTLRNTQTAGNAASAETEKQHFTDKETGAELELVDSVSMLEWLANNYKSFGAALE
IVTDKSQEGAQFVKGFGGIGGILRYRVDFAMHDIEDGIADFDLDDY
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtctggtggtaatggactggatgatagctcagcggatagaaatgttgaaatt
tggaaggttaaaaggctaatcaaaagtctagaagctgctcgaggtaatggtacgtcaatg
atttctctaattattcccccaaaagatcaaattctacgggctagtaaaatgttagccgat
gaatatggtactgcgagcaatataaaatctcgcgttaatcgactgtctgtccttggcgct
cttacttccgtccaagctaggttaaaactgtataacaaagtgcctccaaacggattagtc
atatactgtggaacgattgtcaccgatgaaggaaaagagaaaaaagtgaatattgatttt
gaaccattcaaaccaatcaatacctcactgtatcagtgtgacaataaatttcacacggaa
gctctgcaagcgttgttagcagatgacaacaaatttggattcatcgtcatggatggtaat
ggtgccttatttggtacattgcagggaagttcaagggaagttttgctgaaatttactgtc
gacttgccaaaaaagcatgtttgttctcaattcatattgacccgaatgacgttgttttta
acacggaatactattattgtgattgtagtagaatgcgttgttgaaagccgtggtggtcag
tctgctttgaggttcgctcggttacgtttggaaaaaaggcataactacgttcgtaaagtt
gccgaaactgctgtacagatgttcataacaaatgataaggttaacatcagtggcctagtg
ttggccggaagtgctgatttcaaatccgaactcggccagtcagatatgcttgatcagcgt
ttgcaagcgaaaatattaaaaattgtcgatgtatcctatggtggggaaaatggattcaac
caagcaattgaactgagcgccgatgctttgcattacgtgaaatttattcaagagaagaag
cttatttcgaaatattttgatgaaatttcccaagacactggcaaatacgtctacggtata
gatgatacgttaagagggcttgaaatgggagccgttgaaacgttgatatgttgggaaaat
ttagatattatccgttatacactacgcaacacccaaactgctggtaacgctgcatcagcg
gaaacggaaaagcaacattttacggataaagagaccggcgcagagttggagcttgtagat
tcagtgtcgatgctggaatggttagccaacaattataaatcattcggagctgctcttgaa
attgtgaccgataaatctcaagaaggtgcccagtttgtgaaagggtttggtggtattgga
ggtattttgcggtatcgagttgattttgcaatgcacgacatcgaagacggaattgcagat
ttcgatctggatgattattga
DBGET
integrated database retrieval system
