Trichinella spiralis: Tsp_00442
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Entry
Tsp_00442 CDS
T01609
Name
(RefSeq) putative nematode cuticle collagen domain protein
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
tsp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_00442
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
Tsp_00442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_00442
04121 Ubiquitin system [BR:
tsp04121
]
Tsp_00442
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_00442
Enzymes [BR:
tsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
Tsp_00442
Spliceosome [BR:
tsp03041
]
Complex B
Other components
Prp19 complex
Tsp_00442
Complex C
Prp19-CDC5 complex
Tsp_00442
Ubiquitin system [BR:
tsp04121
]
Ubiquitin ligases (E3)
U-box type E3
Tsp_00442
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
Tsp_00442
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
Collagen
Prp19
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Col_cuticle_N
WDR55
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_WDR75_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
U-box
Beta-prop_DCAF4
Beta-prop_DCAF12
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
10901655
NCBI-ProteinID:
XP_003376178
LinkDB
All DBs
Position
Unknown
AA seq
815 aa
AA seq
DB search
MAYDDCEKLVAQHASMRRVAFFGVVISTIAVVASVITLPMVYSYVQTLQSYMLNEIEFCK
LRSRDMWSEIVTIQSTQPVSRQRREWLFGQWLNAASGAQNYGTYSQSGYSQPVHQESGYG
AAPPPQESYVEEPAPVALPTVTVIKECCTCHQGPPGPPGSPGDDGTDGLDGLDGAPGKPG
RDGVVLPPEGPVPEPCQICMPGPIGAPGAVGVKGPPGPKGKPGAPGLDGQPGMRGLVGTE
GPQGLPGDCGPKGPKGDAGKIYDVQGPPGEPGPRGEDGPKGLRGFPGPDGVPGIKGPPGD
QGELGLPGQQGPTGPAGPMGNEGPRGPTGSCEHCPVPRTAPVSNEIPEVPVLSPVSGRIY
EKRLIEKYIAENGTDPVNGEALTVEQLIEIKTEPVFQPRPPNASSIPGILRMLQDEWDAV
MLHSFNLREQLLTSRQGLIIEFIYELLENFILFYSELSQCAYNFDAACRVISRLTKEVTA
SREALATLKPHTTITSVKSGGLHSATAPGITCLDVFIPDPHSVVTGGNDHSVVTFNCATE
DVTAVLKGHKKKVTKVLYHPVDVMSNIVLSSSCDTTVRVWSVGSQSTTHVLRSHSSPVTG
ISIHATGDYVLSISSDEKWIFSDIFTGQTICSVADSEPPSQGRILMCLLLLFKIIICFIL
GMTACQFHPDGLIFGVGNNAAAIKIWDMKEQSNVANFPGHAGAVRALSFSENGYYLASVA
DDSMIKLWDLRKLKNFKTIALDDSFQPQDVCFDQSGSYLAVAGTEIKVFQSKQWVCLCDL
TDHSDIVTGVRFGKNAEFLISSSFDRSIREYRPEQ
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggcttatgacgactgtgaaaagcttgtagctcaacatgcaagtatgcgtcgtgttgca
ttttttggtgtagtaataagcaccattgccgtggttgcttctgtgatcactttgccaatg
gtctacagttatgtgcaaacgttgcagtcttatatgttaaacgagatcgaattctgcaaa
ttacgttcaagagatatgtggagtgaaattgtcactatacaatctacgcagccggtatcc
aggcaaagacgtgaatggctatttgggcagtggttgaatgctgcatccggtgctcaaaat
tatggaacttattcgcagtctggctatagtcaaccagtccaccaagaaagtggttatgga
gctgcaccacctccacaagaaagttacgttgaagagccagctccggttgctttacctaca
gtaaccgtgatcaaagaatgctgcacttgccatcaaggacctccaggaccaccgggatca
cctggagatgatggtacagacggattggatggattggatggtgctccaggaaaacccgga
cgtgatggcgtcgtactacctccagaagggcctgttccagaaccatgccaaatttgcatg
cctggacctattggtgcgccaggagcagttggtgttaaaggtccaccgggtccaaaaggt
aaacctggtgcaccaggtcttgatggacagccaggcatgcgtggtctggtcggaactgag
ggccctcaaggtcttcccggtgattgtggtcctaaaggccctaaaggcgatgctggaaaa
atttacgatgttcaaggtcctcccggtgagcctggaccaagaggagaagatggaccgaaa
ggtcttagaggctttccaggtccagatggagttccaggaattaaaggtccaccaggagat
caaggcgaacttggacttcctggtcagcaaggtccaactggtccagcaggcccaatgggc
aatgaaggtccaagaggtccaaccggtagttgcgaacattgtccagttcctcgtacagct
cccgttagtaatgaaattcctgaagttcccgttctttcacccgttagtggtcgcatttac
gagaagcggttgattgaaaaatatattgcggaaaatggtactgatccagtcaatggagaa
gcgcttactgtggaacaactgatcgaaattaaaactgaaccagtatttcaacctagaccg
ccaaatgcatctagcattcctggtattttgcgcatgcttcaggatgaatgggatgcagtt
atgttacacagcttcaaccttcgtgagcagcttctcacttcgagacaaggtttaataatt
gagtttatttatgagttgttagagaattttattttattttattcagaactatctcaatgt
gcttataacttcgatgcggcatgccgagtcatttcacgcttgacaaaagaagtgactgct
tctcgggaagcattggcaactctgaagccgcatacgacgattacttctgtgaaatccgga
ggtttgcacagcgctactgcaccgggaataacctgcttggatgtattcattcctgatccg
cattcagttgttaccggaggcaatgatcattcagttgtcactttcaactgtgctacagaa
gatgttactgctgttttgaaaggtcataagaagaaagtgacgaaagttttataccatcct
gtcgatgtaatgtcaaacatcgtattgagcagtagctgtgatacaacagtgcgcgtttgg
tctgttggatcccagtcgaccacgcatgtgcttcgttcacattcttcacctgtaactgga
atcagcattcacgctactggagattacgtgctaagtatatcttctgacgaaaaatggatt
ttctccgacatcttcactggacaaacaatatgttcagtggctgattcagagccgccatcg
caaggtcggattctgatgtgcttgttgttgttgtttaaaataatcatttgcttcatttta
ggcatgacagcgtgtcaatttcatccagatggattgatttttggcgttggaaataacgct
gcagcgatcaaaatttgggatatgaaagagcagtcgaacgtggccaattttccaggacac
gcaggcgctgtacgtgcattgtctttctctgaaaatggatactatttagcatcagtagct
gatgacagtatgatcaagttgtgggatttgagaaagttgaaaaatttcaaaactatcgct
ttggatgacagttttcaacctcaagatgtctgtttcgatcaaagtggcagttatttagct
gtggcaggcactgaaataaaagttttccagagtaaacagtgggtttgtttatgcgatctt
acagaccattcggacattgtgacaggcgttcgttttggcaagaatgcagaatttttaatt
tccagcagttttgatcggtccattcgtgaatatcgtcctgaacaataa
DBGET
integrated database retrieval system
