Trichinella spiralis: Tsp_00518
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Entry
Tsp_00518 CDS
T01609
Name
(RefSeq) Fip1 motif protein family protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
tsp
Trichinella spiralis
Pathway
tsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Tsp_00518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_00518
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Tsp_00518
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
10901805
NCBI-ProteinID:
XP_003376323
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MESEVADTEVEQVQTSEEIDVSTSSPPKNPDPYPRIVVTIEEEDEDKNEINESSTSKDSP
KENHAVPENAENVSSKTETATEQTKEITAFEELSSDDEDNICITIGDVKPTLPTANFRQM
GQKSGNARYSNKLDIDSTGTYNGTPIFDVDIATIEAKPWREPGADVTDYFNYGFTEETWQ
TYCERQKRLRTEFGPANANKAYFNSIPSLNAPPRLGGPIPTITSLPPPPVAFSAVLSSES
DRQSTEKSSSTFNKIKMADQNSRFACDDAEEEPSPGSGQGNGDSKTKEPLPSSTMLAAPP
CVPPHGLGIPPGFPPAVVPPVPGLGVPPGVPPPNLAGPPPHFGAPPPPGIGFAGFPFPPP
CRPPFPPRGYAGFNQPEQESGRQHSPPYSDKSSNGDDEPLRYGYSKRSEMDPSRHGGVYH
GSQGSTRRSRSPPGLSHIYSRYRSRRRSRSPSRLSPEMYCLDEVAPDVDSHSSNTYARES
RSSYYRRRSSGGPDDSSMYPGNGSTYGNSNSINAAGGSEHRRRSRDRARSSRDHSSSRRR
RDEESSSKRKKRQ
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgaagtagcggataccgaagttgaacaggtgcaaacttctgaagagatagat
gtatctacgtcctcccctcctaaaaatccagatccttatccaagaattgttgtcacaatt
gaagaagaggatgaggataagaatgaaataaatgaatcttcaacgtcaaaagatagtcca
aaagaaaaccatgcagtgcctgaaaatgcggaaaatgtctcttccaaaactgaaactgct
actgaacaaacaaaggagattactgcgtttgaagaactgtcgtctgacgatgaagataat
atttgtattactataggtgatgtgaagccaactttaccaacggcgaactttcgccagatg
ggtcaaaaatcaggcaacgcgcgatattcaaataaattagatatcgactctactggcaca
tacaatggaacgccgatatttgacgttgacattgcgacaattgaagcaaaaccatggcgt
gagccaggtgctgatgtaaccgactatttcaactatggatttacagaagagacctggcaa
acgtattgcgaacggcagaagcgtttgcgaactgagttcgggccagcaaatgcgaacaaa
gcatatttcaatagtatccctagtttgaatgcacctcctcgactcggcggtccaattccc
actattacaagtttaccgcctccaccagttgcattttctgcagttctttcttctgaatct
gatcgacagtcgacagaaaagtcatcttccacattcaataaaatcaaaatggccgaccag
aacagtcgatttgcctgcgatgatgcagaagaagaaccgtcaccaggttctggtcaaggc
aatggtgattcgaaaactaaagaaccactaccaagctctactatgttagcggcgccacca
tgcgtcccaccacatggtttaggcatcccgccaggtttccctcctgctgtagttcctcca
gttccaggcttgggcgttccaccaggagtaccacctccaaatttggctggtcctcctcca
cattttggagcgccacctccaccaggaattggttttgccggctttccgtttccacctcca
tgcagacccccgtttccaccacgtggctatgcaggattcaatcaacctgaacaagaaagt
gggcgacaacacagccctccatattctgataagagcagcaatggcgacgatgaaccgttg
cgttatggttacagtaaacggtcggaaatggatccttccagacacggcggtgtttaccac
ggttctcaaggaagtactcgtcgatcgaggtctccgcccggtctaagtcacatctacagt
cgctaccggagtcgtcgccgcagtcgcagtccgagccgactatcgccagagatgtactgt
ttggacgaagtggcgccggatgtcgattcgcacagctcgaacacctacgcacgggaatcg
cgcagctcttattaccgcaggcgctcgtccggtggtccagacgattcttccatgtatcca
ggcaacggttccacttatggaaattcgaacagcattaacgcggccggtggaagtgagcat
cgccgtcgcagccgagatcgagccaggtctagtcgtgaccacagcagcagtcgtcgacgt
cgagatgaagaatccagttcgaaacgcaaaaagcgacagtaa
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